Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2044 ATGGAAGTAGCTAATTGTCCACATGCACAGAAGCAGAATTTACAGGCATCAGGCCGAAAAGTTAATTCTGGATCACAAAAAGATCTGTGGCTTGTTGTGCGAGATGGATCTCTGAATGATGTAGAGTCAGCATTAGCATCACTAAAAAAGAGTGGTGGCAATATCAATTTGAGGAACACCTTCGGGCTGACTCCTCTTCATGTTGCAGCTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTTGCGGCTGGTGCAGATCCTGATGCTCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGTTGCGAGCATCCTTCTTCAGCATGGTGCTTCAATTACATTGGAGGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCAATGTGTTTCAGGTTTTTGGAAATGAATACGATTCAGTTGCTACCGAGGTATTTAGTTGGGGAAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGCTACCATGTAAAGTTGATTCACTTAATGGTTCGATCATTAAGCTTCTTTCTGCGGCAAAGTTCCATAGTGTGGCACTTACTGATCGTGGAGAAGTGTATACTTGGGGATTTGGAAGAGGGGGCCGTCTGGGGCATCCTGATTTTGACATACACAGTGGTCAAGCTGCGGTCATCACTCCCCGCCAGGTGACTTCTGGTCTAGGTTCTCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACTGTTATTGCTACTCAGGGCGGCGAAGTGTTCACTTGGGGATCCAATCGAGAGGGACAGCTTGGGTACACTTCTGTTGATACACAACCTACAGCTCGGAGAGTATCTTTGTTGAAGTCAAAAATTGTTGCCGTTGCTGCAGCAAACAAGCACACAGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACATGGGGTGGCAATAGAGAGGGCCAGCTTGGTTACGGCACCTCAAACTCGGCCTCTAACTACACCCCGCATGTGGTTGAATCCTTGAAGGGGAAGATCTTAACTGGAGTTTCTGCTGCAAAATATCACACAATTGTTTTAGGATCTGACGGAGAGGTATTTACCTGGGGTCACCGACTTGTTACTCCAAAACGTGTTGTGATTACTAGGAACTTAAAGAAAAGTGGAAGCACTCCTTTAAAGTTTCATCGCAAGGAACGACTTCACGTAGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGAAGATGGTGCATTATTTTATGGGTCTCCTCAGATCCTGATCTTAGATGCCAGCAGCAGCAGAGTGTCTGCTGGAGCACGGAATGCCATACAATTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGCGAGGACATTGTCATGCGCAATCTTGATTATATATTTTCAGTTTCAGCACATGCTGTAGCAAGTGCCTCACTAGATATTTTGGCGAGCCTCGAAGGGTTTGAAGAGGATGATAATGAGATAGAGTGTCAAAAGACCTATGACAAACCCATGAAAATATCTGCACTGAAATTGGAGAAAGCTCAAAGGTCAGGTTCCTTCTACAGCCAGGATGATCCTGATAGTGAAATCTCCAAAGTAGTTCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTCGAAACTAAGCAGTCTAAAGGACATATTCTCGATGACCAACAGATGGCAAAACTTCAATCTAACCCAAGGATGAATCCTGATAGTGAAATCTCCAAAGTAGTTCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTCGAACTAAGCAGTCTAAAGGACATATTCTCGATGACCAACAGATGGCAAAACTTCAATCTAAGTCAGCACTTGAAGAGCTCACTTTCAGAGCTAGGCATTCCTGTCGAGACCTCACAGAATAAAGAGTCATCTTCTACACAACCAGAAGGGAAAGGTAGTAAGAAGGGTAAATCATCCAAAAAACAAAGGAGAAAAAGTGGCAACAAATCAAGCATAGAGCAGTCGGATATAGAATCTGTTTATTCTAAAAGTGAAATGATCCCTGAATCTGAAGACCTGTTGGACATGCCATCTCCTAATTCAAAGGTGGAAGAGGATATCTGCAAACATTCCACAGCAGACCAGGTTGAAAAAGATTTAGCTTTTGTTGTACAGAAGAAAGATGCTTCAGAGTTGCTGAAGGGTAAGGGTCAGTCACCAAAGGTTTCCAAGAAGAAGAACAAGAAGGGTGGGCTTTCAATGTTTCTGAGTGGTGCTCTTGATGAAGTCCCAGAAGAGGTGGCTCCCCCTCCACCAACACCAAAAAATGACGGTCCTGCCTGGGGCGGGGCCAAGTTTGGGAAGGGTTCTACTTCTCTTCGCGAAATCCAGGATGAGCAGAGCAAAATAATGGGTAACAAGCCACCCGGGGTTAAAGACAAGGTGGAAGATCTTTCTGATCTCGGCAGTTGCGGGAAAATAAAGTTGAGTTTATTTCTTCATTCTAGCCCAATACCTGTCGCCACAACTCGAATTCCCCAGGCATCTGATGGAGATAAAAATACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCTCAACCATTTAAGCTGTCTTTAAGGGACATCCAAATGCAACAGGTAAAGAAACAAGCCCTCTCCAGTAGTCCAAAGACTAAAACTGCTGGGTTCACTATAGCAACTGGCCAAGGCTCCCCATCCGAAGCAACTGGGATGAACCATTGTAAGATATGTACAATGAACTTGTTTGTTTCCTTTTTGCTTAGAAATGTTATATTTAAGTCAGAGTCTCAGGAATGGGAGAAGACATAA 2859 0.4421 MEVANCPHAQKQNLQASGRKVNSGSQKDLWLVVRDGSLNDVESALASLKKSGGNINLRNTFGLTPLHVAAWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASILLQHGASITLEDSKSRIPVDLLSGNVFQVFGNEYDSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSIIKLLSAAKFHSVALTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYTSVDTQPTARRVSLLKSKIVAVAAANKHTAVVSDLGEVFTWGGNREGQLGYGTSNSASNYTPHVVESLKGKILTGVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVITRNLKKSGSTPLKFHRKERLHVVSIAAGMVHSMALTEDGALFYGSPQILILDASSSRVSAGARNAIQLLEIADSLGADDLKKYCEDIVMRNLDYIFSVSAHAVASASLDILASLEGFEEDDNEIECQKTYDKPMKISALKLEKAQRSGSFYSQDDPDSEISKVVRAIRKKLQQIEMLETKQSKGHILDDQQMAKLQSNPRMNPDSEISKVVRAIRKKLQQIEMLELSSLKDIFSMTNRWQNFNLSQHLKSSLSELGIPVETSQNKESSSTQPEGKGSKKGKSSKKQRRKSGNKSSIEQSDIESVYSKSEMIPESEDLLDMPSPNSKVEEDICKHSTADQVEKDLAFVVQKKDASELLKGKGQSPKVSKKKNKKGGLSMFLSGALDEVPEEVAPPPPTPKNDGPAWGGAKFGKGSTSLREIQDEQSKIMGNKPPGVKDKVEDLSDLGSCGKIKLSLFLHSSPIPVATTRIPQASDGDKNTPPWAASGTPPQPFKLSLRDIQMQQVKKQALSSSPKTKTAGFTIATGQGSPSEATGMNHCKICTMNLFVSFLLRNVIFKSESQEWEKT* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2044 952 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 263 IPR000408 -
Psa3g2044 952 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Psa3g2044 952 PRINTS Chromosome condensation regulator RCC1 signature 188 201 IPR000408 -
Psa3g2044 952 PRINTS Chromosome condensation regulator RCC1 signature 207 223 IPR000408 -
Psa3g2044 952 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Psa3g2044 952 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Psa3g2044 952 PRINTS Chromosome condensation regulator RCC1 signature 317 331 IPR000408 -
Psa3g2044 952 PRINTS Chromosome condensation regulator RCC1 signature 414 432 IPR000408 -
Psa3g2044 952 MobiDBLite consensus disorder prediction 646 720 - -
Psa3g2044 952 Gene3D - 3 142 IPR036770 -
Psa3g2044 952 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 429 - -
Psa3g2044 952 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 448 501 - -
Psa3g2044 952 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 586 923 - -
Psa3g2044 952 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 504 587 - -
Psa3g2044 952 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Psa3g2044 952 SUPERFAMILY Ankyrin repeat 42 135 IPR036770 -
Psa3g2044 952 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 153 204 IPR000408 -
Psa3g2044 952 MobiDBLite consensus disorder prediction 740 761 - -
Psa3g2044 952 Pfam Regulator of chromosome condensation (RCC1) repeat 154 201 IPR000408 -
Psa3g2044 952 Pfam Regulator of chromosome condensation (RCC1) repeat 205 259 IPR000408 -
Psa3g2044 952 Pfam Regulator of chromosome condensation (RCC1) repeat 315 365 IPR000408 -
Psa3g2044 952 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Psa3g2044 952 MobiDBLite consensus disorder prediction 1 20 - -
Psa3g2044 952 Pfam Ankyrin repeats (3 copies) 48 126 IPR002110 GO:0005515
Psa3g2044 952 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 368 IPR000408 -
Psa3g2044 952 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 314 IPR000408 -
Psa3g2044 952 ProSiteProfiles Ankyrin repeat region circular profile. 61 92 - -
Psa3g2044 952 ProSiteProfiles Ankyrin repeat region circular profile. 95 126 - -
Psa3g2044 952 CDD BACK 450 483 - -
Psa3g2044 952 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Psa3g2044 952 Gene3D - 143 389 IPR009091 -
Psa3g2044 952 SUPERFAMILY RCC1/BLIP-II 118 428 IPR009091 -
Psa3g2044 952 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 424 IPR000408 -
Psa3g2044 952 PRINTS Ankyrin repeat signature 62 77 IPR002110 GO:0005515
Psa3g2044 952 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Psa3g2044 952 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 448 501 - -
Psa3g2044 952 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 429 - -
Psa3g2044 952 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 504 587 - -
Psa3g2044 952 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 586 923 - -
Psa3g2044 952 MobiDBLite consensus disorder prediction 646 662 - -
Psa3g2044 952 SMART ANK_2a 95 124 IPR002110 GO:0005515
Psa3g2044 952 SMART ANK_2a 61 90 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2044 Psa-Chr3 181750388 181758389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2044 40 135 Acyl Lipid Metabolism Gene Families AT5G53470 35.417 2.73e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2044 K24810 - gmx:100814063 769.615