Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2042 ATGCAGACAAGGACGGTTCAAGTGAAGCAACTTTCAGATCTAGCTACTGAGAGAGAGATTTACGAATTCTTCTCATTTTCTGGAGAAATTGAAAACATTCAGATCGTAAGAGAATATGGAAAACCAAAGACTGCGTTTGTGACATTTAAAGATCCAAAAGCACTTGAAATTGCGTTGTTGTTATCGGGAGCAACAATAGTAGACCAGATTGTGAGTATAAGTCCAGTTGAGAACTATGTTGCAAATCGTGAGATGCAAGAAGCAAGGGCAGGGGAATATTCTATAACTATTGCTCCTTCTGAAGATGCCGCATTGAATTCCGAGGAGGAGAAACCCGGCGGAAGAGTATATCTTAGTAAAGCACAAGATGTAGTTACGAATATGCTGGCAAAAGGATCAGCTATAAAACAAGATGCCGTGAACAAAGCTAAAGCATTTGATGAGAAGCATCAATTGACTGCCAATGCATCAGCAAAGGTCAGTTCATTTGACAAGAGAGTTGGACTGACCGAGAAATTGACAGTTGGACTCTCTGTAGTGAATGAGAAAGTGAAATCTGTGGATCAGAGGCTACATGTTTCAGATAAAACAATGGCAGCAATATTTGCAGCCGAGAGGAAGTTGAACGATACTGGATCAGCTGTCAAAACAAGCAGATACGTGACTGCCGGAACATCATGGCTAACGGGTGCTTTTAGCAAGGTGGCGAAAGCAGGAAACGTGGCCGGTACTAAAACTAGAGAAAAGTTTAACATGGCTGTTTCAAACTTGACAACAAAGGATACCTCATTGGTTGTATAG 801 0.4132 MQTRTVQVKQLSDLATEREIYEFFSFSGEIENIQIVREYGKPKTAFVTFKDPKALEIALLLSGATIVDQIVSISPVENYVANREMQEARAGEYSITIAPSEDAALNSEEEKPGGRVYLSKAQDVVTNMLAKGSAIKQDAVNKAKAFDEKHQLTANASAKVSSFDKRVGLTEKLTVGLSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLTGAFSKVAKAGNVAGTKTREKFNMAVSNLTTKDTSLVV* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2042 266 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 265 - -
Psa3g2042 266 SUPERFAMILY RNA-binding domain, RBD 2 88 IPR035979 GO:0003676
Psa3g2042 266 Gene3D - 1 74 IPR012677 -
Psa3g2042 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Psa3g2042 266 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 265 - -
Psa3g2042 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Psa3g2042 266 SMART rrm1_1 5 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2042 Psa-Chr3 181643551 181647039 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2042 - - pop:7474654 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2042 3 181643551 181647039 Psa3g2042 3 181643551 181647039 ECH