Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1918 ATGGCTTCCTTCCCTCCTCCTGGTTCACTCACCCTCTGCGAACTCAACCGCGACCTAATCACCGTCGATGCACTCTCCGACGATCGAGCCGATCAAACCTACGGAAAGCATCTCGGATTGGTGTTCAGCCCCGTGCCGTTTCAGCCTCCACCTCCGCCTCTCGAGAACGACGTTCCCGAACAGGAAGCAACCGCCGCGGTAACCGTTCCTAGAAAAGGTCCTCTGGCACTTTTGCAAGGCCTTGTAAACGAGTGTCTCAGACACCTCTTCTACCCTAACGATGTTCATTTGTTGCCTGAGGTTAATCTTCAAGGAGTGAGTTGGCACCTTAATAGGCATATAATTGCTTTTATTTCTGGGCCCAACCAAGTATTAGTTCGTGATTATGAAGATCCAGATGGGAAGGATTCAATTATTTTGACCAACGAGTCTCAGAGAGATGTTAGAGTGCTAGAGTGGAGGCCAAATGGTGGGAGGATGCTAACTGTGGGTTGCAAGAGTGGAATTTGCATATGGTCTGCTTCATATCCTGGAAACACAGCATCTACTAGATCTGGCACTATATCCTTTGTAGGAAATCTATCGAGAGGCTCTGGAATTCGGTATCTCCTGGTTGATTTTCTTCGAAGTCAGAATGGTGAACATGTTAGCGCCCTTACTTGGAGTCCGGATGGAAGATACTTAGCTTCTGCTTCATACGAGAGCTCTTCTTTCACTGTGTGGGATGTTGCCCAAGGTGTGGGGACACCTATTCGACGAGGATTAGGAGGCATATCAATGCTAAAGTGGTCGCCCACTGGAGATTACTTCTTTGCTTCAAAATTTGATGGAACATTTTATCTTTGGGAAACAAACACTTGGACATCAGAACAATGGTCATCAACTAGTAGTGGTTTTGTCAAGTGTGCAACATGGGATCCAGATGGGCGTATGATACTGCTTGCATTTTCCAAATCATCAACTTTGGCATCAGTTCATTTCGCATCAAAGCCTCCCTCATTAGATGCACATCTGTTACCTGTTGAGTTGCCAGAGATATTATCGTTGACAGGCAGGGAATTGAAAAAATAG 1071 0.4631 MASFPPPGSLTLCELNRDLITVDALSDDRADQTYGKHLGLVFSPVPFQPPPPPLENDVPEQEATAAVTVPRKGPLALLQGLVNECLRHLFYPNDVHLLPEVNLQGVSWHLNRHIIAFISGPNQVLVRDYEDPDGKDSIILTNESQRDVRVLEWRPNGGRMLTVGCKSGICIWSASYPGNTASTRSGTISFVGNLSRGSGIRYLLVDFLRSQNGEHVSALTWSPDGRYLASASYESSSFTVWDVAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSSGFVKCATWDPDGRMILLAFSKSSTLASVHFASKPPSLDAHLLPVELPEILSLTGRELKK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1918 356 SUPERFAMILY WD40 repeat-like 102 319 IPR036322 GO:0005515
Psa3g1918 356 Gene3D - 96 337 IPR015943 GO:0005515
Psa3g1918 356 PANTHER ALADIN/ADRACALIN/AAAS 1 351 IPR045139 -
Psa3g1918 356 SMART WD40_4 201 242 IPR001680 GO:0005515
Psa3g1918 356 SMART WD40_4 244 283 IPR001680 GO:0005515
Psa3g1918 356 SMART WD40_4 133 173 IPR001680 GO:0005515
Psa3g1918 356 SMART WD40_4 286 326 IPR001680 GO:0005515
Psa3g1918 356 Pfam WD domain, G-beta repeat 215 242 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1918 Psa-Chr3 173135006 173142844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1918 216 319 Miscellaneous Gene Families AT5G08390 27.619 5.68e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1918 K14320 - gmx:100808599 546.199