Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1902 ATGACAGATGTGTCAATGTGTTGCAGCAGCAGCTGTGAGCTGAGTCCAGATGAAGAGAGGATCATCATCAGAGACATTGCACTTTCTGTTCAAACTAATATCAAAGAAGGCGACACCTTCTTCATCATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACCCTTCTTATGATGGATCTTCCTTTCATGAACATAGCGATTTGGCTAGTTTAAGTGCTTTAAAGAGGCCAGCTGGTATTGATAACTATGATTTGATAGATAATACTGGATCAGAGGACTCTAGTACGGGTATTCAAATTCACGATACACTCTTAGAAGGGCGTGACTATGTATTACTTCCCCAAGTGGTTTGGGACCAATTATTTAAATGGTATGGTGGCGGACCTTCATTGGCGAGGAAAGTTATTAGTTCAGGTCTTTCACAGACAGAATTTGCAGTAGAGGTGTATCCTTTACGCCTTCAATTACTTGTGTTGCCAAAAAATGTTCGGTCCACTATAAGAATAAGCAAGAAGGAAACTATTGGACAGCTACACAAAAGCGCTTGTGAAATATTCGATCTTCAGTTGGACCAGGTGCGCATCTGGGATTACTATGGCCATCGGAAGCATGCCTTGATGAATGACATGGATAAGACTCTAGATGATGTAAATCTACAAATGGACCAAGATATTCTTATTGAGGTCGTAAACAATACAAATAGCACAAGCTCTGCTCAAGAAAATGGATCAGCACAGAGGGAGGCAAATTCTGTTCTTGTGGAGCCGTCAAAATCAAGCTTATCAGCTGCTGGTGCCCTGTCTACTAGCAAGGGTCCATCTAGAGGCAACAATATCGAACATTCTTCAACTCAGAAACTAAATTCTCCGGACAGAGATTCAGAAAACCCTTATGGAACTCTCGGTGTCACCACAAGAGGTTCATTTGGTGGTCTCACCGGGTTGCTTAATCTTGGCAATACATGTTTCATGAATAGTGCAATACAATGCCTTGTTCACACACCAGAATTTGCTAGGTACTTTAGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCACTCGGCATGGTTGGTGAACTAGCCCTAGCATTTGGTGAGTTGCTTCGAAAACTATGGGCACCTGGGCGAACACCGATTGCTCCTCGGCCTTTTAAAGCAAAGCTTGCTCGCTTTGCACCTCAGTTCAGCGGGCACAACCAACATGATTCTCAGGAGCTCTTAGCATTTTTACTTGATGGTCTCCATGAAGACTTAAATCGTGTAAAGCACAAACCATATATAAAGTCTCGAGATGCTGATGGCCGACCGGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGTCAGGGACAATACAAGTCGACTTTAGTTTGTCCAGTTTGCAACAAAGTCTCTGTCACATTTGATCCTTTCATGTACCTTTCCCTGCCTCTCCAGTCCACCACCAATAGGACCATGACGGTGACCGTTTTTAGTTGCGATGGTTCTACCCTACCATCTCCGTGTACAGTAACTGTGCCCAAGCAGGGACGATGCAGAGATCTTATACAAGGGCTTAGCAATGCATGCTCATTGAAGCATAACGAGAGGATAGTGCTTGTGGAGATACGAAACCATTTGATCCATAGATTTTTTGAAGATCCTCTTCAATTGTTGTCCTCAATTAAAGATGATGACCGTCTTGCCGCTTACAAGATTCCAAAGATGGACAAAAACACAAAGTACCTCCAGTTGATACATCGCCGCAGAGAGCAGAGTAGTGACTCGCATACCGTTTCAGGATGGAAGCCATATGGAACACCTATTGTTTCGTTGATCTCATGCGATGATACAATCACAAGAGGTGACATACAAGTCATAGTGAATGGTATACTCTCTCCACTTCTTTCGAAATCTGCTTCTGCTGAAACCAACGCCGTGTCGAATTCAACGAATAAGGATGACACTGTTTCAAAAGCAACACACCTACCAACGTTACCCCTACTATTGGTAGATGATAACAATGCTTGCATTGATCTTTCAATGGGAGGGGAGAAAGTAGTTAAACTGTCACCGTCATCAGCAAGAGTTCTAGTTTATATTGATTGGTCTCAGAAGCTTCTGGAAAAGTATGATACTCATCCACTTGAGACTTTGCCTGAAGTTTTGAAATATGGGCCTGTAACCAAAAAAGCCCGTTCTGAACCTCTCTCATTGTACACTTGTTTGGAAGCTTTTCTGCGTGAAGAACCTCTGGTACCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAGGCAAGCAAAAAGCTTGATTTATGGAGGCTCCCAGAGGTTTTGGTAATTCATTTGAAGAGATTCTCATACAGCAGGTCAATGAAGCATAAACTCGAGACTTTCGTTAACTTTCCTATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACTCGCGGCGTCAAGTGTATGAACTCTACGCCCTTACCAATCATTACGGTAGTATGGGTAGCGGACATTATACTTCACATATTAAGCTTTTAGACGAAAACAGGTGGTACAATTTTGACGATAGCCACATATCACTTATAAGTGAAGACGAGGTAAATACTGCTGCCGCATATGTTCTGTTTTACAGGAGGGTGAAAACTGATGATGACATTGTAAGCAATGGAGCTTAG 2730 0.4212 MTDVSMCCSSSCELSPDEERIIIRDIALSVQTNIKEGDTFFIITQRWWQHWIEYVNQDQTNPSYDGSSFHEHSDLASLSALKRPAGIDNYDLIDNTGSEDSSTGIQIHDTLLEGRDYVLLPQVVWDQLFKWYGGGPSLARKVISSGLSQTEFAVEVYPLRLQLLVLPKNVRSTIRISKKETIGQLHKSACEIFDLQLDQVRIWDYYGHRKHALMNDMDKTLDDVNLQMDQDILIEVVNNTNSTSSAQENGSAQREANSVLVEPSKSSLSAAGALSTSKGPSRGNNIEHSSTQKLNSPDRDSENPYGTLGVTTRGSFGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTNRTMTVTVFSCDGSTLPSPCTVTVPKQGRCRDLIQGLSNACSLKHNERIVLVEIRNHLIHRFFEDPLQLLSSIKDDDRLAAYKIPKMDKNTKYLQLIHRRREQSSDSHTVSGWKPYGTPIVSLISCDDTITRGDIQVIVNGILSPLLSKSASAETNAVSNSTNKDDTVSKATHLPTLPLLLVDDNNACIDLSMGGEKVVKLSPSSARVLVYIDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARSEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQVYELYALTNHYGSMGSGHYTSHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDDDIVSNGA* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1902 909 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 840 857 IPR018200 GO:0004843|GO:0006511
Psa3g1902 909 Gene3D - 7 156 IPR035927 -
Psa3g1902 909 SUPERFAMILY Cysteine proteinases 318 898 IPR038765 -
Psa3g1902 909 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 898 IPR028889 -
Psa3g1902 909 Pfam Ubiquitin carboxyl-terminal hydrolase 320 895 IPR001394 GO:0004843|GO:0016579
Psa3g1902 909 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Psa3g1902 909 CDD Peptidase_C19R 740 896 - -
Psa3g1902 909 Gene3D - 157 245 - -
Psa3g1902 909 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Psa3g1902 909 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 908 - -
Psa3g1902 909 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Psa3g1902 909 MobiDBLite consensus disorder prediction 243 303 - -
Psa3g1902 909 Gene3D Cysteine proteinases 715 905 - -
Psa3g1902 909 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Psa3g1902 909 SMART dusp 33 146 IPR006615 GO:0004843
Psa3g1902 909 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 908 - -
Psa3g1902 909 Gene3D Cysteine proteinases 311 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1902 Psa-Chr3 172160510 172171751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1902 688 899 Miscellaneous Gene Families AT2G24640 29.302 1.34e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1902 - - mtr:MTR_7g088760 1691.78