Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1843 ATGTGGGCTCTTCGTCGAGCTTCGTTAACGCCTCTCAGGAAGAAAGGTTTTAATGTAAGGATTTCTTGTGTGAATTTAACTTCAAGTACTTGTGTTGAAAATGAGGCTGGAATTGATGATTCTCGACGAATATTTAATGGTGATGGTGGATTTCCGTTGCGGAATAGATGTTATCATTCTGGAAATGGTTCTTTTAAATTTACTGTTGGTAGACGTGAGCTTTCGTCAGAAGCCGGTGCGAGTAGCACGAAAGATGAGGATGATGATTTGGAGGAGGGGTTTTCGGAGTTGGAGACACCTGTGGGTGATGAAAGTGAAAAACTGTTGGATTCTGATACAGAATTGTCTGATGAGAGTGATGAATCAGATATTGAGGAACCGCACAATGAGCTGGAGTTACCGTTATCCCATGACGAGGATGTTATTTTAACGGAGAAGAAGTCTAGCCGGAGAAAGGCTGAGTCGGAACTCTTCAAGGCGATTATGGAGGCTCCGGGTTTGTCTATTCATAAGGCTCTGGATAAGTGGGTTGAAGAGGGGAAGGAAATGAGCAGAGAGGAGATATCGCTGGCTATGGTTAATCTTCGGAAGCGTAAGATGTTTGGGAGAGCTTTGCAGCTCTCGGAGTGGGTTGAGTCGAAAAAGCATCTTCAATTTGTTGAAAAGGATTACGCTTCCCGACTTGATTTAATTGCCAAATTGCACGGCCTTTATAAGGCAGAAGTTTACATCCAGAGTATTCCAGAATCTTCTAGAGGGGAGATAATATACCGAACTTTATTGGCTAACTGTGTTATTCAGAACAATTTGAAGAAAGGAGAGGAGATTTTTAATAAAATGAAGGATTTAGAGTTTCCTCTTACAGCATTTGCATGTAATCAGTTGCTAATTCTGTATAAAAGGAATGACAGAAAGAAAATAGCTGATGTTTTATTGCTGATGGAACACGAGAACGTCAAACCTTCTCCTCTGACTTTCAAAATCCTAATAGACGCAAAAGGCCAGTCCAATGATATTGCTGGAATGGAACAAATTGTTGATAAAATGAAGGCTGAGGGTATTGAACCGGACATTCAAACAAGCGCAGTTTTGGCAGGGCATTACATATCAGCTGCGCTTGTTGATAAAGCTAAAACTATATTGAAGGAGATGGAAGGTGAAAACTTGAAAGAGAATAGATGGGTATGTCGAGTTTTGCTTAATCTCTATGCAGACTTGGGAATGGCCGATGAAGTGGAAAGAGTTTGGAAGGTCTGCGAGACACACCCTTGGATTGAGGAGTGTTTGTCTGCAATTGAAGCCTGGGGGAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTTGAGATGATGTCAAAAAGATGGAAGCTTTCATCTAAGAACTGCTCAGTACTACTGAAGGTTTATGCAAACCACAACATGCTAGTGAAGGGAAAGGATCTTGTTAAGCGAATGGCAGATAATGGGTGTCTAATAGGTCCGATGACTTGGGATGCATTAGTGAAACTTTACGTTCAAGCAGGTGAAGTGGAAAAGGCAGATAGTATTCTGCAGAAGGCAATCCAGCAGAGTCAGATGAAGCCATTATTTTCTTCCTATATCGCTATTCTGGAGCAGTATGCTAAGAGAGGCGACATCCATAATTCGGAAAAGATTTTCTATAGAATGAAACAAGCTGGTTATGCATCTCGAATAAGGCAGTACCATGTTCTTATAGAAGCCTACATAAATGCCAAAGTTCCAGCTTATGGAATTAGGGACAGGTTGAAAGCTGATAATATATATCCCAACAGAACTTTGGCTCACATGTTGACTCAAGTTGATGGTTTTAGGAAGAGTCCAATTTCCGACTTGCTTGATTGA 1863 0.4106 MWALRRASLTPLRKKGFNVRISCVNLTSSTCVENEAGIDDSRRIFNGDGGFPLRNRCYHSGNGSFKFTVGRRELSSEAGASSTKDEDDDLEEGFSELETPVGDESEKLLDSDTELSDESDESDIEEPHNELELPLSHDEDVILTEKKSSRRKAESELFKAIMEAPGLSIHKALDKWVEEGKEMSREEISLAMVNLRKRKMFGRALQLSEWVESKKHLQFVEKDYASRLDLIAKLHGLYKAEVYIQSIPESSRGEIIYRTLLANCVIQNNLKKGEEIFNKMKDLEFPLTAFACNQLLILYKRNDRKKIADVLLLMEHENVKPSPLTFKILIDAKGQSNDIAGMEQIVDKMKAEGIEPDIQTSAVLAGHYISAALVDKAKTILKEMEGENLKENRWVCRVLLNLYADLGMADEVERVWKVCETHPWIEECLSAIEAWGKLKKIDEAEAVFEMMSKRWKLSSKNCSVLLKVYANHNMLVKGKDLVKRMADNGCLIGPMTWDALVKLYVQAGEVEKADSILQKAIQQSQMKPLFSSYIAILEQYAKRGDIHNSEKIFYRMKQAGYASRIRQYHVLIEAYINAKVPAYGIRDRLKADNIYPNRTLAHMLTQVDGFRKSPISDLLD* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1843 620 MobiDBLite consensus disorder prediction 110 127 - -
Psa3g1843 620 MobiDBLite consensus disorder prediction 84 99 - -
Psa3g1843 620 Gene3D Tetratricopeptide repeat domain 187 428 IPR011990 GO:0005515
Psa3g1843 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Psa3g1843 620 PANTHER OS12G0527900 PROTEIN 50 620 - -
Psa3g1843 620 PANTHER OS01G0280400 PROTEIN 50 620 - -
Psa3g1843 620 Pfam PPR repeat 496 519 IPR002885 -
Psa3g1843 620 Pfam PPR repeat 463 490 IPR002885 -
Psa3g1843 620 Pfam PPR repeat 432 454 IPR002885 -
Psa3g1843 620 Pfam Pentatricopeptide repeat domain 522 576 IPR002885 -
Psa3g1843 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 528 IPR002885 -
Psa3g1843 620 Pfam Pentacotripeptide-repeat region of PRORP 257 416 IPR033443 -
Psa3g1843 620 MobiDBLite consensus disorder prediction 76 138 - -
Psa3g1843 620 Gene3D Tetratricopeptide repeat domain 430 617 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1843 Psa-Chr3 166907120 166910912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1843 160 560 EF-hand Containing Proteins AT1G02150 23.671 6.07e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1843 - - mtr:MTR_7g089770 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1843 3 166907120 166910912 Psa3g1843 3 166907120 166910912 ECH