Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1839 ATGGCACCTGTGCTTCTTCGTCGTCTTCCTCTACTTCGCTTCATGGCCTCTCGCAATTTCTTCACACCCTCTTCCTTCCGTCTTCATTCTTATCCTCATTCTTCTTCATCTCTTCCTCTTTCTACTCTCTCTAAACCCAGGAAGAGAATTTCTCTTAGAAAGTTTGCAGTTCCTAGTTTGGTGTCAAATGCAGTCACTTCAAGGGCGTATATGTCTTCTTTATCTGAGGCTGAAGATATTCAGAAAAATGAAGGTTCCAAAGCTTATGGTTCTGATCAAATTCAGGTACTTGAAGGCTTGGACCCTGTAAGAAAAAGGCCTGGGATGTATATTGGAAGCACCGGCACGCGTGGGTTGCACCATTTGGTCTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCAAAGATTGCCGTTGTTTTACATGAAGACGATGCAGTGAGCATCACCGACAATGGTCGTGGGATTCCTACGGACATGCATCCAACTACAAAGAAATCTGCCTTAGAGACAGTGTTGACGATCTTGCATGCTGGTGGAAAATTTGGTGGCGTCAATAGTGGCTACTCTGTTTCCGGAGGTTTACATGGTGTTGGCTTATCTGTTGTTAATGCCTTGTCTGAGGTATTAGAGGTAACCGTTTGGCGTGAAGGGTTGGAATACACACAAACATATTCTCGCGGGAAGCCGGTGACAACTTTGAATTGTGTCATGCTTCCTTTTGAAAGTAAAGACCGTCAAGGAACGCGTATCAAATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGAATATAACACAATAGCTGGACGCATTAGGGAGTTGGCTTTCCTTAACCCAAAGCTTACGATTGTGCTTCGGAAAGAAGACAGTGATCCAGAAAAGGTCCAATATAATGAGTATTTCTATGCCGGTGGATTGGCTGAATATGTGAAATGGCTTAACACAGATAAGAAAGCTGTTCATGATGTTCTGAGTTTCAGAAAAGAAATAGACGGAGTCGCAGTTGATGTAGCTTTGCAATGGTGTGAAGATGCATATTCCGATACAATACTAGGATATGCTAATAGTATACGGACTGTCGATGGCGGCACCCATATTGATGGCATGAAGGCTTCTTTAACAAGAACACTAAACAGTCTCGGAAAGAAATCAAAAGTTATCAAGGAAAAGGATATTACTTTAAGTGGAGAGCATGTGAGAGAAGGCTTAACCTGTGTTGTCTCAGTCAAGGTCCCAAATCCGGAGTTTGAAGGACAAACAAAAACAAGGTTGGGAAATCCAGAGGTTCGGAAAGTGGTTGACCAATCTATTCAAGAGTATCTTACCGAGTATTTGGAACTGCATCCAGATGTTCTGGATGCAGTGCTCTCTAAATCTCTTAATGCTTTCAAGGCAGCTTTGGCTGCAAAAAGAGCAAGGGAGTTGGTGAGACAGAAGAGTGTATTGAGATCTTCATCTCTTCCGGGGAAACTTGCTGATTGTTCATCATCAAATCCTGAAGACTGTGAAATTTTTATAGTTGAAGGTGATTCTGCTGGGGGAAGTGCTAAGCAAGGTCGTGACAGGCGCTTTCAGGCCATTCTCCCATTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATCCTTGGTCTCGGTCTCGGAGTGAAGGGAGAGGATTTTAAAAAGGACGCACTTCGATATCATAAGATTATTATTTTAACTGATGCTGATGTAGATGGTGCTCACATCCGTACTCTGCTACTGACATTTTTCTATAGATATCAGAGAGCTTTGTTTGATGAAGGTTACATATATGTTGGTGTTCCGCCACTTTACAAGGTTGTAAGGGGAAAACAAGTGCACTATTGTTATGATGAAGCCGATCTTAAAAAACTTAAGAGTTCATTCCCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGCTGGGAGAGATGATGCCCTTGCAACTATGGGAGACAACCATGGATCCAGAACAGAGGTTGTTGAAGAAGTTGACGGTTGAGGATGCAGCTGAAGCAAATATTGTTTTTTCATCCCTTATGGGTGCTCGGGTGGATGTTCGGAAGGAGCTGATACGAAATGCCGCAAACATGATTGATATTGATCAGCTAGATATTTGA 2193 0.4223 MAPVLLRRLPLLRFMASRNFFTPSSFRLHSYPHSSSSLPLSTLSKPRKRISLRKFAVPSLVSNAVTSRAYMSSLSEAEDIQKNEGSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGTRGLHHLVYEILDNAVDEAQAGFASKIAVVLHEDDAVSITDNGRGIPTDMHPTTKKSALETVLTILHAGGKFGGVNSGYSVSGGLHGVGLSVVNALSEVLEVTVWREGLEYTQTYSRGKPVTTLNCVMLPFESKDRQGTRIKFWPDKEVFTTAIQFEYNTIAGRIRELAFLNPKLTIVLRKEDSDPEKVQYNEYFYAGGLAEYVKWLNTDKKAVHDVLSFRKEIDGVAVDVALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDAVLSKSLNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVVRGKQVHYCYDEADLKKLKSSFPPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGARVDVRKELIRNAANMIDIDQLDI* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1839 730 CDD TOPRIM_TopoIIA_GyrB 511 625 IPR034160 -
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 89 99 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 270 285 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 285 298 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 313 335 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 405 421 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 453 467 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 467 487 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 563 572 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 681 693 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 PRINTS DNA gyrase subunit B signature 697 713 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 CDD TopoII_Trans_DNA_gyrase 313 470 - -
Psa3g1839 730 TIGRFAM gyrB: DNA gyrase, B subunit 89 729 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Psa3g1839 730 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 43 730 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 118 133 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 153 166 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 198 212 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 361 374 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 513 527 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 580 596 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 598 615 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 618 630 - -
Psa3g1839 730 PRINTS DNA topoisomerase II family signature 660 676 - -
Psa3g1839 730 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 117 263 IPR003594 -
Psa3g1839 730 ProSitePatterns DNA topoisomerase II signature. 515 523 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 Gene3D - 313 491 IPR014721 -
Psa3g1839 730 SUPERFAMILY Type II DNA topoisomerase 488 722 IPR013760 GO:0003918|GO:0005524
Psa3g1839 730 CDD HATPase_GyrB-like 119 304 - -
Psa3g1839 730 Pfam Toprim domain 512 613 IPR006171 -
Psa3g1839 730 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 89 303 IPR036890 -
Psa3g1839 730 Coils Coil 730 730 - -
Psa3g1839 730 Pfam DNA gyrase B 314 483 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 Gene3D - 492 730 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 Pfam DNA gyrase B subunit, carboxyl terminus 656 716 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 ProSiteProfiles Toprim domain profile. 511 626 IPR006171 -
Psa3g1839 730 SMART topII5 118 721 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Psa3g1839 730 Gene3D - 86 312 IPR036890 -
Psa3g1839 730 PANTHER DNA GYRASE SUBUNIT B 43 730 - -
Psa3g1839 730 SUPERFAMILY Ribosomal protein S5 domain 2-like 314 484 IPR020568 -
Psa3g1839 730 SMART HKATPase_4 114 264 IPR003594 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1839 K02470 - gmx:100779534 1183.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1839 3 166869435 166875441 Psa3g1839 3 166869435 166875441 ECH