Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1814 ATGATGGCAGAAGAAAACGGAGTACACAACCTGTTTCTTGAAACTGCAACAGCTATGGAGATTCAGAACGGAGATGCACCACCACAAGTACACCAACAAGAACCACCCAAGTGCTTAATTACCAAGACCGACGATGGAAGCATAGAGAGTCACCGTTACTACCTTTCTCGCAGAACAACACTCGAGATGCTGAAAGACAGAGGCTACTCCATTCCCTCTCCCGAAATCCAGCTCTCTCTTGAAGAATTTCGTCAAGTTCATGGCCAATCTCCTGATGTTGATCGACTCCGTTTTACTGCTAGTCATAGCACTGACCCCTCTAAAAGGATTTTAGTGATTTTCAGTGGGCCAGGGATTGTGAAAGTGAATGTGATTAGGAACATTGCTGGACAGATTGTGAATAGAGACACTCTCAGTGGTCTCATTTTGATCGTGCAAAGTCAGATTACTAGCCAGGCTTTGAAGGCGGTTAATCTTCTATCTTTCAAAGTTGAAATTTTTCAGATCACAGACTTGCTTGTTAATATTACAAAGCACGTGTTGAAGCCAAAGCATCAGGTTCTGACCGATAAGCAGAAAAAAAATCTCCTGAAGAAGTACAATATACAAGAAAAGCAGCTTCCCCGGATGCTACAGACAGATGCAATTGCTCGATATTATGGACTTCAGAGGGGGCAGGTAGTTAAAGTTACCTACACCGGTGAAATCACCCAGATGCATGTTACCTATCGATGCGTTTGGTGA 744 0.4341 MMAEENGVHNLFLETATAMEIQNGDAPPQVHQQEPPKCLITKTDDGSIESHRYYLSRRTTLEMLKDRGYSIPSPEIQLSLEEFRQVHGQSPDVDRLRFTASHSTDPSKRILVIFSGPGIVKVNVIRNIAGQIVNRDTLSGLILIVQSQITSQALKAVNLLSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1814 247 Gene3D - 172 247 IPR035913 -
Psa3g1814 247 Pfam RNA polymerase Rpb5, C-terminal domain 174 246 IPR000783 GO:0003677|GO:0003899|GO:0006351
Psa3g1814 247 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 47 175 IPR036710 GO:0003677|GO:0003899|GO:0006351
Psa3g1814 247 Gene3D - 44 171 IPR036710 GO:0003677|GO:0003899|GO:0006351
Psa3g1814 247 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 29 247 IPR014381 -
Psa3g1814 247 PIRSF RPB5 42 247 IPR014381 -
Psa3g1814 247 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 29 247 - -
Psa3g1814 247 SUPERFAMILY RPB5-like RNA polymerase subunit 172 247 IPR035913 -
Psa3g1814 247 Pfam RNA polymerase Rpb5, N-terminal domain 49 131 IPR005571 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1814 Psa-Chr3 161534518 161538363 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1814 K03013 - gmx:100306033 352.058