Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1749 ATGCCATTTTCGACTCGCCTCCATCTCTTTGCAAGGCCTTTACTCTCTTCCTCTCTCCTTTACCCTTCGCGCCAGAATGGAATTAGAAAAATATTGACGAGGATTGGCATGAGGACCTGTTCGCTTTCTTCTACAGTTTCAGCTGAAGCTTCAGGTTTAGAATGTGATGAGATCTTTGATGATGCGAAAGCAGCAGAGAAAAATAACGCACTTTGCTTGGCTGTCTCGCAGCTTGCTAGTGAGTTTAGCAAGGAGTCAATGTTATCTTTGAGGAAGTTTTTTGGTGTACGCTATGCCAATGTGGTATCTACCGGCTCTTTGAAGCTTGACTTAGCACTTGGAGTTGGAGGATTACCAAAGGGTAGGATTGTTGAAATTTATGGACGAGAAGCCGCTGGTAAGACGACGCTTGCCCTTCAGATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAGTGCATTAGACCTTTCACTCGTGGAGTCAATGGGTGTAAATACCAAAAACCTTCTCATCTCAAATCCAGACTGTGCAGAAAATTTGTTGAGCATGGTTGATACATTAACAAAAAGCGGAGCTGTAGACGTGATTGTGGTTGATAGTGTTGCTGCTCTTGTCCCAAAATGCGAACTTGATCAATTGGGAGTTGCTACAAGTCATGATTTACATTCACGAATGATGACTCAAGCTCTACGGAAAATTAATTATTCATTATCCCGCTCCCAAACTCTCTTAGTTTTTATTAATCAGGTTAGATTTAGTCCAAAATTATTCGGGGGACGTGGCCCTATGGAAGAGGTCACCTGTGGTGGAAACGCTTTGAGATTCTATGCAGCTGTTCGTTTGCGACTTTCAAGAATGGGATTGATCAAAACCGAAGATAAGGTTGAGGGTATTACGGTATGTTGCCAAGTAGTAAAAAATAAACTAGCACCTGCAGCAATGAAAAAAGCTGAACTAGGTATCAAGTTTGGAAGAGGCTTTTGCCAAGAATCCGAGGTCTTTGATTTGGCTTGTGAACATGGACTCATTATGAAAGACGAGGGGAACTATTTTATTGAAGGGGAGGCTCTTAGTAGTAGAGAAGCTGCTGAAGTATTTTTGGTTAAAAATAAGAAGATTTGTGACAAGTTAGTTATGGACATGAAACGACTTTATCTTTAA 1182 0.4095 MPFSTRLHLFARPLLSSSLLYPSRQNGIRKILTRIGMRTCSLSSTVSAEASGLECDEIFDDAKAAEKNNALCLAVSQLASEFSKESMLSLRKFFGVRYANVVSTGSLKLDLALGVGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVESALDLSLVESMGVNTKNLLISNPDCAENLLSMVDTLTKSGAVDVIVVDSVAALVPKCELDQLGVATSHDLHSRMMTQALRKINYSLSRSQTLLVFINQVRFSPKLFGGRGPMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGITVCCQVVKNKLAPAAMKKAELGIKFGRGFCQESEVFDLACEHGLIMKDEGNYFIEGEALSSREAAEVFLVKNKKICDKLVMDMKRLYL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1749 393 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697|GO:0005524|GO:0006281
Psa3g1749 393 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697|GO:0005524|GO:0006281
Psa3g1749 393 PRINTS RecA protein signature 228 257 IPR013765 GO:0003697|GO:0005524|GO:0006281
Psa3g1749 393 PRINTS RecA protein signature 276 304 IPR013765 GO:0003697|GO:0005524|GO:0006281
Psa3g1749 393 PRINTS RecA protein signature 310 339 IPR013765 GO:0003697|GO:0005524|GO:0006281
Psa3g1749 393 PRINTS RecA protein signature 363 380 IPR013765 GO:0003697|GO:0005524|GO:0006281
Psa3g1749 393 Gene3D - 97 391 IPR027417 -
Psa3g1749 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 322 IPR027417 -
Psa3g1749 393 ProSiteProfiles RecA family profile 1. 98 257 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Psa3g1749 393 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 5 393 - -
Psa3g1749 393 Pfam recA bacterial DNA recombination protein 70 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Psa3g1749 393 SMART AAA_5 120 294 IPR003593 -
Psa3g1749 393 ProSiteProfiles RecA family profile 2. 263 339 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Psa3g1749 393 ProSitePatterns recA signature. 279 287 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Psa3g1749 393 PANTHER RECA 5 393 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1749 Psa-Chr3 156081686 156085500 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1749 - - gmx:100777423 575.474