Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1685 ATGCCCCTCCTAAGACATAGTTTCTTTTTCTCATTCACTATCATCATCATTTCATTTGTTGCTTGTAATAGCAACTTGCAAAAGGACCCACTTATTGCTACATACGTTGATAATTCACCTTCCAATGATGATGATGGTGGTGGTACATTATTATTCAAGAACTTGATCAAAGAAAACACAAATAATGTTTTGAGCTTAAACAAGTTTGGTGGAACTTCATCACATAAATTAGAAATTGTTAATGTCAATGATTATGGAGCTAAAGGTGATGGTTATACAGATGATACACAGGCATTCAAGAAAGCTTGGGAAGTAGCATGTTCTTCAGGGGAATCAGTTTTTGTGGCACCACAAGATAATAGTTTTTTACTCAAACCAATTAGATTCTCTGGTCCTTGCAAATCTAACATAACAGTCCAGATATTTGGAAATCTTGAAGCATCAGATAAACTATCAGATTACAAGAAAGATAAAAGCCACTGGCTTATATTTGACAGTGTTCAGAAACTATTAGTTAATGGTGGTGGAACCATTAATGGAAAAGGAAACATATGGTGGGAAAACTCATGCAAAAGGAACAAAAAGAGACCTTGCAAGGATGCTCCAACGGCTTTAACATTTTATAATTGCAACGACTTGATTGTTCAAAATTTGAAGATAGAAAATGCACAACAAATTCATGTTTCATTTCAAGATTCGATTAATGTTACTGTTTCTGGTGTCAATATCTCATCACCCGAGGATAGTCCTAACACAGATGGAATTCATGTCACCAACACACAAAATATCAAAATCTCTAGCTCTGTAGTAGGAACAGGTGATGATTGTATATCAATTGTACATGGATCTAGGAACGTAGAAGCTACAAACATAACTTGTGGACCTGGCCATGGCATCAGCATTGGAAGCTTAGGGGCTGGAAAATCCAAAGAATTTGTTTCTGGAGTAATAGTAAATGGATCTAAGATTTCTGGAACTAAAAATGGAGTTAGAATTAAGACATGGCCGGGAGGCTCAGGAAGTGCTAGCAATATCAAATTTCAGAACATTGAAATGGACAATGTGGCCAACCCTATAATAATAGACCAAAATTATTGTGACAAGAAAAAAAAGCCATGCAAAAAATCGAATTCTGCTGTCCAAATAAGCGATGTGTTGTTCGAGAATATAATAGGTACAAGTGCTTCTGATGTAGCAGTGAACTTTGATTGCAGCAAGAAATTTCCATGCAAGGATATAGTAATGAAGAACATAGACTTGGAGTATGAAGAAGAAGGAGAAGCTGCTAAGGCTTTATGCAACAATGTTGATTTGTCTTACACAGGACATGTTATCCCTCGTTGCTACTCATAA 1353 0.3599 MPLLRHSFFFSFTIIIISFVACNSNLQKDPLIATYVDNSPSNDDDGGGTLLFKNLIKENTNNVLSLNKFGGTSSHKLEIVNVNDYGAKGDGYTDDTQAFKKAWEVACSSGESVFVAPQDNSFLLKPIRFSGPCKSNITVQIFGNLEASDKLSDYKKDKSHWLIFDSVQKLLVNGGGTINGKGNIWWENSCKRNKKRPCKDAPTALTFYNCNDLIVQNLKIENAQQIHVSFQDSINVTVSGVNISSPEDSPNTDGIHVTNTQNIKISSSVVGTGDDCISIVHGSRNVEATNITCGPGHGISIGSLGAGKSKEFVSGVIVNGSKISGTKNGVRIKTWPGGSGSASNIKFQNIEMDNVANPIIIDQNYCDKKKKPCKKSNSAVQISDVLFENIIGTSASDVAVNFDCSKKFPCKDIVMKNIDLEYEEEGEAAKALCNNVDLSYTGHVIPRCYS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1685 450 Gene3D - 68 445 IPR012334 -
Psa3g1685 450 SMART pbh1 210 230 IPR006626 -
Psa3g1685 450 SMART pbh1 313 334 IPR006626 -
Psa3g1685 450 SMART pbh1 233 259 IPR006626 -
Psa3g1685 450 SMART pbh1 260 281 IPR006626 -
Psa3g1685 450 SMART pbh1 342 363 IPR006626 -
Psa3g1685 450 ProSitePatterns Polygalacturonase active site. 290 303 IPR000743 GO:0004650|GO:0005975
Psa3g1685 450 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Psa3g1685 450 Pfam Glycosyl hydrolases family 28 112 437 IPR000743 GO:0004650|GO:0005975
Psa3g1685 450 PANTHER ENDO POLYGALACTURONASE 7 449 - -
Psa3g1685 450 SUPERFAMILY Pectin lyase-like 76 449 IPR011050 -
Psa3g1685 450 PANTHER - 7 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1685 Psa-Chr3 149671130 149674188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1685 55 450 Glycoside Hydrolase AT2G41850 56.892 2.51e-151 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1685 K01184 - gmx:100797601 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1685 3 149671130 149674188 Psa3g1685 3 149671130 149674188 ECH