Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1647 ATGGAAAAGCCGCCACCACTCTTCATCTTCCAAATCATCTTATTCCTTCTCACCCCATCAATTCTTGCCACATCAGACTCTCCAAACCCCACCCCCGTTACCTTCTCCGTCACCGAATTCGGAGCAACCGGAGACGGTGTCCACTACGACACCTTATCAATCCAATCCACCATCGACTCATGTCCGTCCGGTCTCCCCTGCCGCGTCACCTTCCCATCACCGGGAAAGTACCTAACCGCAACCATACACCTAAGATCCGGCGTGATCCTAAACGTGGAGACAGGCGCCACCATCCTCGGTGGCACGAAACTTGAAGACTATCCAAAGGAGTCATCGAGGTGGTACGTGGTACTGGCGGAGAACGCGACGGATGTCGCAATCGAAGGCGGCGGTGTTGTGGACGGACAGGCGGAGAAATTCGTTGTGAGATATAATCCGAGAAAGAATGTAATGGTGAGCTGGAATCAAACTGGGAGTTGTTTGGGTGATGAATGCAGACCTAGACTTGTTGGATTTCTTGGATGCAAAAATGTTAGAATCTTCAACATTACTCTTAATCAACCTGCTTATTGGTGCTTACACTTGGTGCGGAGTGAAAACATATCCATTCATGATATTGCAATTTATGGAGACTTGAATATACCAAACAATGATGGGATTGATATCGAGGACTCAAACAACACGGTAATCACTCGATGCCACATTGATACAGGAGATGATGCAATCTGTCCAAAGTCATCCACTGGCCCTGTTTACAATTTAACAGTCACTGATTCTTGGATTCGATCCAAATCTTCTGCAATCAAATTAGGCAGTGCTAGTTGGTTTGAATTCAAGCATTTTGTTTTTGACAATATCACTATTGTTGATTCTCATAGAGGGCTTGCGTTCCAGATCCGTGATGGAGGAAATGTCGATGACATTGTCTTCTCAAACATAAATATAAGCACAAGATACTATGATCCATTATGGTGGGGTAGAGCTGAGCCTATCTATGTCACAACTTGTCCAAGAGACTCAACCTCAAAAGAGGCTTCAATCTCAAATGTCCGATTCATCAACATCACAGCAAATTCTGAAAACGGAATCTTCCTCTCTGGTTCAAAGAGAGGATTGTTAAGAAACTTGAGCTTCATCAACATGAACATCACTTACAGAAGGTTCACCGGTTATGCTGGTGGGTTGTTGGACTATAGGCCAGGATGCCAAGAATTGGTTAAACACAAAACTGCAGGGATTATGATGGAACACATTGAAGGTCTTGAGGTTAGAAATGTAGAAATGAGATGGGAAAATAATGAACTTGAGCAGTGGAACAATCCTATGGAGTTTAAACCATCTACTGTGAATAACATCTATTTCTCTAATTTTAATTCTATTTTGTATTCAAATAGCAAATCAAGTTGA 1407 0.4321 MEKPPPLFIFQIILFLLTPSILATSDSPNPTPVTFSVTEFGATGDGVHYDTLSIQSTIDSCPSGLPCRVTFPSPGKYLTATIHLRSGVILNVETGATILGGTKLEDYPKESSRWYVVLAENATDVAIEGGGVVDGQAEKFVVRYNPRKNVMVSWNQTGSCLGDECRPRLVGFLGCKNVRIFNITLNQPAYWCLHLVRSENISIHDIAIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTDSWIRSKSSAIKLGSASWFEFKHFVFDNITIVDSHRGLAFQIRDGGNVDDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVRFINITANSENGIFLSGSKRGLLRNLSFINMNITYRRFTGYAGGLLDYRPGCQELVKHKTAGIMMEHIEGLEVRNVEMRWENNELEQWNNPMEFKPSTVNNIYFSNFNSILYSNSKSS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1647 468 Gene3D - 13 392 IPR012334 -
Psa3g1647 468 PANTHER PECTIN LYASE-RELATED 22 460 - -
Psa3g1647 468 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 22 460 - -
Psa3g1647 468 Pfam Glycosyl hydrolases family 28 61 385 IPR000743 GO:0004650|GO:0005975
Psa3g1647 468 SMART pbh1 225 246 IPR006626 -
Psa3g1647 468 SMART pbh1 342 367 IPR006626 -
Psa3g1647 468 SMART pbh1 198 224 IPR006626 -
Psa3g1647 468 SMART pbh1 305 327 IPR006626 -
Psa3g1647 468 SMART pbh1 251 272 IPR006626 -
Psa3g1647 468 SUPERFAMILY Pectin lyase-like 27 392 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1647 33 463 Glycoside Hydrolase AT3G57790 68.027 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1647 - - mtr:MTR_7g092470 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1647 3 147430637 147434993 Psa3g1647 3 147430637 147434993 ECH