Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1646 ATGGCACCAAGATGGAAAGGAAAAGATACAAAATCCAAAAAGGATGCAGAAGCCGAGGCACTTAAAGAACCCATGTCAAAGATTATATCGCAACTTCAGTCTTCTTTAGTTCAATCAAATGCTTCTGGATTTCTCTCTGATAATTGTGTACACTTAGCAGTGCAAGCTGAACAACTTGACCTACTTGATAAAGCATGCTTTGGTCGACCTGTGAGAAACGTTGAAAAGGACACGTACTGGTTTCAATTAACCTTGGAGGAAGCATTCTACCTATGTTATTCCTTGAAATGCCTCAAGATTAATGGTGGTGCTGATACTATTCCTTTGAATGATGAAGAGTTGTGGTGTTACTTCAAGTCCAAGAAACAAGCATTCCCCTTTTTCTACAAGGCTTATTCTCACCTTCGAATGAAAAATTGGGTAGTAAGGTCAGGGGCTCAGTATGGTGTAGACTTCATTGTCTATCGTCATCATCCGGCTCGGGTCCATTCTGAGTATGGTGTACTTGTTCTATCACACGACAATGATGATGATCTAAATGGAAGATTGAGAGTATGGTCTGATGTTCATTGCACTACTCGACTTCTTGGAAGTGTTGCAAAAACTTTATTAATTTTGTATGTTAATAAAAATGGTCACAGTGATGAGTCTCCATTATGTTTGGAAAACTATGCCATTGAAGAGCGCACGATCTCTAGATGGAGTCCAGAACAATGTCGTGAAAGATCCATGTAG 735 0.3959 MAPRWKGKDTKSKKDAEAEALKEPMSKIISQLQSSLVQSNASGFLSDNCVHLAVQAEQLDLLDKACFGRPVRNVEKDTYWFQLTLEEAFYLCYSLKCLKINGGADTIPLNDEELWCYFKSKKQAFPFFYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVLSHDNDDDLNGRLRVWSDVHCTTRLLGSVAKTLLILYVNKNGHSDESPLCLENYAIEERTISRWSPEQCRERSM* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1646 244 PIRSF tRNA_endo_SEN2 3 242 IPR016589 GO:0000213|GO:0000214|GO:0006388
Psa3g1646 244 Pfam tRNA intron endonuclease, catalytic C-terminal domain 128 212 IPR006677 GO:0000213|GO:0006388
Psa3g1646 244 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKE 1 243 - -
Psa3g1646 244 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 125 213 IPR036167 GO:0006388
Psa3g1646 244 Pfam tRNA intron endonuclease, N-terminal domain 42 115 IPR006678 GO:0000213|GO:0006388
Psa3g1646 244 Gene3D - 124 218 IPR011856 GO:0003676
Psa3g1646 244 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 1 243 IPR006676 GO:0000213|GO:0006388
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1646 Psa-Chr3 147407184 147409228 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1646 K15322 - gmx:100810335 388.267