Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1630 ATGACGGAACCAACAACCGATTCATGCACTCCTTCATTGGGTCCCACACCAGCCACGGTGATTCATCCAAGACGCGTGCCGTTCGAACACGGTCTTTTACCTATCCCGCGGCTCATCTTCTCCGACCCCACACAAACCCTAACCTCATTGAAAAATAAGCTTCTAGAATTATCCTCTAACAACCGAGTTGACTCGGCCGCGATTTCTGAGTCGTTGCAGATCTCCGTCGAACAAGCTAGGCTTGTTCTCGAGACTCTCGTTTCGGTTCTCCCTTCCGAATCCGAATCTGATAGCGTCGATGTTCATGATCTCGTTTTGTTTCTATACATTCAATCCTACAAGAGGCTTCTCCCGCGGACTCATAAGGATTCCGCCGCTGTCGCTGATGTTTGGCCTTCCACTTCCGCCTTTGATGGATACTTGTCCGCTCTCACGCCGCTTCAGCTTGTGCGGAGCAACAGCAAGCGGTTTACGCCGTCTCAGGGTGATGAAGAAGCACATCAGCTGTCTTATTTGCAAAAGCATTTGGCTAACATAGTGTCTCTACTAGCAGAGCCCGTGGAGGGGGAAAGTGAAGAATCTCTGGTTTTAACCATGGATAGATTTGAGCACCTTGGTTTTCTATTTCATTATGGTGATAAAGGACTTGAAGGAAATTCGTTGAGTCAATCTTCTCCTTTTTTCGCAAACTCGGATCCTAACATGCCTGCCGTTCCCGCTCCTGCTTCCCAAGTTCACGATTGGCTTCTGCAGAACATAGCTTCTGCTTTGGGACGTATTGCTGAACGGACTTCTTCAAAAGAAAATGGTCCAGTTAGTGCCTCTGATCAGGATGTTGCTATGACTGATGCATCTACTACCTCAGTTAAGGTCTCAACAAGTGCTAGGGGTGCAAGTATCATTGAAGGGATTTCTAAATCATCATATGCAAAGCATGCATCTGACATTAAAGGTTCCTCCGTTAAGGTTCTAAATTGCCATGAATCTGCCATTTACATCTTAGCACCTTTGAGATACGCCACCATCTATGGATGTTCAGATGCGACAATAGTTATTGGAGCAGTTGGAAAGGCTGTGAGAGTAGAACACTGTGAACGAGTTCATGTTATTGTTACAGCAAAACGAATTTGTATTGCTAACTGCCGTGAATGTGTTTTCTTTTTGGGAGTGAACCAGCAACCCCTTATTGTCGGTGATAACCATAAGTTGCAGGTGGCTCCCTATAATACCTTTTACTCCCAGTTGGAGGAACATATGAATGAAGTTGGAGTTCTTCCCACAGTGAATCGTTGGGATGAGCCTATAGCATTGGGCATGGTTGATCCCCATGATTCACTATCTCATCCAGCAGGTGTCTCTGATGCTCAAGCTGAGTCTGCTTCTAGGGTGGATCCTGATCAGTTCACTAATTTTGTGATTCCAAACTGGCTTGGAGAGTCCACCGGCTCTACAGAAGACAATCCGTTCACATTACCCGAGTCATATATGGCATCTCAACAAAGAAATGAAAACAATTTAGTGGAGATAAGGCAACTGTTACGAGAAGCACCATTAGAAGAAAGTCGTAAACGAGAACTGTCATCAGCGCTTCATGTGTATTTCAAGGACTGGTTATATGCCTCTGGGAACATTCGTCAGCTTTACTATTTACAAGGAGATTGA 1662 0.4537 MTEPTTDSCTPSLGPTPATVIHPRRVPFEHGLLPIPRLIFSDPTQTLTSLKNKLLELSSNNRVDSAAISESLQISVEQARLVLETLVSVLPSESESDSVDVHDLVLFLYIQSYKRLLPRTHKDSAAVADVWPSTSAFDGYLSALTPLQLVRSNSKRFTPSQGDEEAHQLSYLQKHLANIVSLLAEPVEGESEESLVLTMDRFEHLGFLFHYGDKGLEGNSLSQSSPFFANSDPNMPAVPAPASQVHDWLLQNIASALGRIAERTSSKENGPVSASDQDVAMTDASTTSVKVSTSARGASIIEGISKSSYAKHASDIKGSSVKVLNCHESAIYILAPLRYATIYGCSDATIVIGAVGKAVRVEHCERVHVIVTAKRICIANCRECVFFLGVNQQPLIVGDNHKLQVAPYNTFYSQLEEHMNEVGVLPTVNRWDEPIALGMVDPHDSLSHPAGVSDAQAESASRVDPDQFTNFVIPNWLGESTGSTEDNPFTLPESYMASQQRNENNLVEIRQLLREAPLEESRKRELSSALHVYFKDWLYASGNIRQLYYLQGD* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1630 553 Gene3D - 298 462 IPR016098 -
Psa3g1630 553 Pfam Tubulin binding cofactor C 318 433 IPR012945 -
Psa3g1630 553 PANTHER CYCLASE-ASSOCIATED PROTEIN CAP/SEPTUM FORMATION INHIBITOR MINC-RELATED 4 553 - -
Psa3g1630 553 PANTHER UNCHARACTERIZED 4 553 IPR039589 -
Psa3g1630 553 ProSiteProfiles C-CAP/cofactor C-like domain profile. 287 424 IPR017901 -
Psa3g1630 553 SMART carp 364 398 IPR006599 -
Psa3g1630 553 SMART carp 326 363 IPR006599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1630 Psa-Chr3 146296564 146306378 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1630 K16810 - gmx:100819271 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1630 3 146296564 146306378 Psa3g1630 3 146296564 146306378 ECH