Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1494 ATGGTGATGAGTGTTCAATTTCAACCATCAGCATGTTTATGGACTCCAAACTCTCCATCTCCACAAATTTCTGGAAAATTTCTTCCCAACCGTGGAAGACTCTCCGCCACACCAACACTCTCATCTCAATCTCCCACCATTCAGATAATTGGCAACAACACATTTGATGGTAACCTAGGAAAGACTGATCTTTGGACTGATATTGACACTGATCTTTATCACTGGACAAAGGTTTTGCGCCCCGTGCAGTGGTTTCCTGGGCATATTGCAAAAGCGGAAAAGGAACTGAAGGAACAGCTTAAGTTGATGGATGTTGTTATAGAGGTTCGGGACGGTCGTATTCCGTTATCCACAAGTCATCCACAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTATGGTTTTAAATAGAGAAGACATGATATCAACTGCAGATCGAAATGCTTGGGCAGAATATTTTACTAAGCTTGGAACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGCACTATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAACGTTAAGCGGAGAGCCAAAGGACTACTTCCTCGTCCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAATCATCTCTGATCAACCGTTTGTTAAAGCGAAGAATGTGTGCAGCAGCTCCAAGGCCAGGAGTTACAAGAACATTGAGGTGGATTCGATTTGGGAAAGATCTTGAATTGCTGGATTCTCCCGGGATACTTCCAATGCGAATCAGTGACCAGTCAGCCGCTATAAAACTTGCAATATGTGATGACATTGGAGAGAAATCCTATGATGTGGCTGATGTTGCTGCAATTCTCGTACAGATGCTTACAAAGCTTCCAGCTGTAGGTCGAGATGCACTTTGTAAACGATACAAGTTTCACGTAGACAGTGAATGTGGTAAAATATTCATAGAGAAGCTTGCGCTTCATTTGTTCAATGGAGATGTTCATCAAGCAGCATACCGTGTCCTGTCAGATTTTAGAAAAGGTAGGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAGGTGA 1077 0.4345 MVMSVQFQPSACLWTPNSPSPQISGKFLPNRGRLSATPTLSSQSPTIQIIGNNTFDGNLGKTDLWTDIDTDLYHWTKVLRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTSHPQMDLWLGNRKRIMVLNREDMISTADRNAWAEYFTKLGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCAAAPRPGVTRTLRWIRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGEKSYDVADVAAILVQMLTKLPAVGRDALCKRYKFHVDSECGKIFIEKLALHLFNGDVHQAAYRVLSDFRKGRFGWTALERPPR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1494 358 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 51 358 - -
Psa3g1494 358 PRINTS GTP1/OBG GTP-binding protein family signature 202 222 IPR006073 GO:0005525
Psa3g1494 358 PRINTS GTP1/OBG GTP-binding protein family signature 248 263 IPR006073 GO:0005525
Psa3g1494 358 PANTHER DAR GTPASE 3, CHLOROPLASTIC 51 358 - -
Psa3g1494 358 TIGRFAM GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 82 354 IPR019991 -
Psa3g1494 358 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 93 257 IPR030378 GO:0005525
Psa3g1494 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 270 IPR027417 -
Psa3g1494 358 Gene3D - 260 348 IPR023179 -
Psa3g1494 358 Pfam 50S ribosome-binding GTPase 202 289 IPR006073 GO:0005525
Psa3g1494 358 Gene3D - 82 255 IPR027417 -
Psa3g1494 358 CDD YlqF 84 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1494 Psa-Chr3 136905407 136911625 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1494 K19828 - gmx:100784201 587.8