Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1468 ATGGACGAAGAAGTTGCCGCCGAAACCAGAAAAGACACTGAAGTAGCGCCGGCACTCATCGCCGTCCACCCAGACCGACACTCCGCCGCCGTAGCAGTCGGACCGGAGCTCCGCGTCTTCAACCTCCTTGGCAATTGTGCAGTTTCTTTAGTTGACGACTCCGTCACCGGTGAACAACCCTTTCATAAAGACAATATTAGAGCCATTCGATTCGGAGCTAAAGGAAAACTGTTCGTATCCGCTGGTGATGATAAAACCCTAAAAATTTGGTCAACGCAATCCTGGCATTGCGTTTCCACTGTGTCGTCGGAGAAGAGAGTTACTGCTGTTGCTATAAGCAACGAAGGATTGCACGTGTGTTTCGCTGATAAATTCGGTCTGGTTTGGGTTGTGGATCTTAATCAAACTTCGCAGGATAAGAAACTAACACCGACACCGCTTCTTTCTCATTATTGCAGTATCATCACTAGCTTGGAGTTTTCGCCAGATAATCGGTTTATTATCAGTGCTGATAGGGATTTCAAAATTCGTGTTACTAATTTTCCCAAGAATCTCTTAAATGGAGCTCACGAGATTCAGAGTTTTTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCTTTTGTTCCAGCTCAGGAAAGCCCTCATAGTCTTCTTCTATCTGGCAGTGGTGATTCCACAGTACGATTGTGGGATATCTCCTCTGGAGCACTCTTGGATACTTGTGAGGTTGCAATTAAGGCAGGGCTTCTAGAGTCCGATGGTAATGCAGAGGAGCATGACCATGCTGTTACTGATTTATGTACCACCCTGGATGGTTTGCTTGTTGCGGTGGCCATTCAAAGCTTGCGTGGAATTGTATTGTTGAGTTGCAATGTTTCTGCCCAAACACTTTCTTTTGCCAAGGTTGTTTCTATTGCAGGAGAGACCTTTATCCCCACCTGCCTGGCAAACAGTTCCCCGACAAAGGAATTGTGGATGGTTACAGGCATCTCTAGTTTACCTGGTTATGATTACCCGTCTTTGGCTCGTGTCCTAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCTGGAAGATGATAAGATTCCCGGTGGAGAAAAGCTGCTAGAAACATTACAAGGAACCACATCTGTTGATGACAATGCATTTTTGGCAGCAGCTGAAGCTGTCAAAGCAGCAATGTGTAACCTATTAATAAAGAAGCATTATCCTTTTGAGAATAGAGAATATAGAAAGAAAACCAGAAATGATAAAAAACTCAAGGAATAA 1278 0.4444 MDEEVAAETRKDTEVAPALIAVHPDRHSAAVAVGPELRVFNLLGNCAVSLVDDSVTGEQPFHKDNIRAIRFGAKGKLFVSAGDDKTLKIWSTQSWHCVSTVSSEKRVTAVAISNEGLHVCFADKFGLVWVVDLNQTSQDKKLTPTPLLSHYCSIITSLEFSPDNRFIISADRDFKIRVTNFPKNLLNGAHEIQSFCLGHTEFVSCLAFVPAQESPHSLLLSGSGDSTVRLWDISSGALLDTCEVAIKAGLLESDGNAEEHDHAVTDLCTTLDGLLVAVAIQSLRGIVLLSCNVSAQTLSFAKVVSIAGETFIPTCLANSSPTKELWMVTGISSLPGYDYPSLARVLVISGIDVEQEPVVLEDDKIPGGEKLLETLQGTTSVDDNAFLAAAEAVKAAMCNLLIKKHYPFENREYRKKTRNDKKLKE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1468 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 241 IPR001680 GO:0005515
Psa3g1468 425 ProSitePatterns Trp-Asp (WD) repeats signature. 219 233 IPR019775 -
Psa3g1468 425 Gene3D - 20 142 IPR015943 GO:0005515
Psa3g1468 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Psa3g1468 425 Gene3D - 143 307 IPR015943 GO:0005515
Psa3g1468 425 SUPERFAMILY WD40 repeat-like 20 345 IPR036322 GO:0005515
Psa3g1468 425 SMART WD40_4 94 132 IPR001680 GO:0005515
Psa3g1468 425 SMART WD40_4 141 180 IPR001680 GO:0005515
Psa3g1468 425 SMART WD40_4 52 91 IPR001680 GO:0005515
Psa3g1468 425 SMART WD40_4 188 232 IPR001680 GO:0005515
Psa3g1468 425 Pfam WD domain, G-beta repeat 61 91 IPR001680 GO:0005515
Psa3g1468 425 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Psa3g1468 425 Pfam WD domain, G-beta repeat 149 178 IPR001680 GO:0005515
Psa3g1468 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 236 - -
Psa3g1468 425 PANTHER WD40 REPEAT PROTEIN 4 18 422 IPR028884 GO:0036265
Psa3g1468 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 94 - -
Psa3g1468 425 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 26 417 IPR028884 GO:0036265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1468 Psa-Chr3 133922218 133926260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1468 62 239 Miscellaneous Gene Families AT5G08390 24.581 3.21e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1468 K15443 - gmx:100809122 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1468 3 133922218 133926260 Psa3g1468 3 133922218 133926260 ECH