Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1384 ATGTCGAACCCTCAAAACCAGAAACCATGGAAAGCTGAATACGCCAAATCGGGACGTTCCTCATGCCGAACCTGCAAAAGTCCCATCGCAAGCGAAAAGCTCCGTCTCGGCAAGATGGTTCAATCTTCCAAGTTCGACGGCCTCATGCCTATGTGGCATCATGCTGACTGCGTAATGAAGAAAGCCAATCAGATAAAATTAGTTGATGATGTTGAAAACCTAGAGACGCTTCGATGGGAAGATCAGCAGAACATTAGAACATACATTCAGAGCAGTGGTGGTGGTTCTACTTCTACGTCCAAGTCGAAGTCGAAGTCCACTGCCGCATCGGCATCTAAGTCAAGTGCTGCATCGGCATCTAAGTCAAGTGCTAGCAAAAATGTTGAATATGGTATTGAAGTTTCACAAACTTCCCGTGCTGCTTGCAAGCATTGTGGTCAGAAAATTATTAAAGGAGAGGTTCGCATATCTACTAAGCCTGATGGTCAAGGTCCCAGGGGTTTGGCTTGGCACCACGCCAAGTGTCTCTTGGAACTATCACCATCAATTCAATTCGATAACTTGTCCGGATGGAATAGTCTCTCATCTTCTGAACAATCAGCTGTCAGTGACTTAGCTATGAAAGACCATCCTACGAACAAGGGAGGTGGTAGTGGTACAGATGTTGAGACTGAAGGGGTTAAAGTATCCACACAACAATCCTCTTCCAGAGGTGGCACTAAACGGGGGAAAGATGCAGAGGGTGAGCAGATGTCAAAAGCTGCTAAGGTCAAGGGAGACATGTCTGTGGGTAGGGGAGTGGCAGTGAAAAATGCTGATGACTCCGGGGAGGTAGGTGGTCTTGAGAATAGCCTAGAGGCGCAAAGCAAAGAACTGTGGGCCCTGAAGGATGATCTTAAGAAGCACGTGACAACAGCAGAGATGCGTGAAATGCTGGAAGCCAATGATCAAGATTCAACTGGATCAGAGCTTGATTTGCGTGATCGCTGTGCTGATGGAATGATGTTTGGAGGACTATGTCATTGCCCACTATGTTCTGGTTTTCTGCGTTATTCTGGAGGAATGTACCGGTGCAGTGGATACATTTCTGAGTGGAGTAAATGTTCCTACTCTACATGTGAACCAAAACGTACGGAAGGGAAGTGGAAAATTCCAAAGGAAACAGATAATCGGTATCTTACAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAATTAGGATATTGCCTCCGCCACCGTCAAAGACTTCTGCTGAAAGTTCAATTTCTGCAGGCCAACATCAATCATCAAACAGTGAAAGTTTGGCAGATTTAAAAGTTGCCATCTGTGGATTCCCTAAAGCTTCCATTGATGAATGGAAACACAAAATTGACGGCATAGGTGGAGTTTTTCATGCAAAAGTGAAGAAAGATACTAGTTGCTTGGTGGTCAGTGGAGCGCTCAAGGACGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAGTACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATGGAAAGAAAGAAGAAGCTTCCATTTGATATGTACAAAGTTGAAATGACTGGGGAGACTTCTAGCATGGTCACCGTCAAAGTGAAGGGACAAAGTGCTGTTCATGATGCTTCTGGCCTACAGGATTCTGGACACATACTGGAGGAAGGGAAAAGTATATATAATACAACTTTGAATATGTCTGATTTGTCCACTGGTATTAACAGCTACTACATCCTTCAAATAATTGAAGAAGATAAAGGGTCAGATTGCTATGTGTTTCGTAAATGGGGTCGAGTGGGAAGTGACAAGATTGGAGGGTCCAAACTGGAAGACATGTCGAAATCTGATGCTATTAGGGAATTCAAACGACTATTCTATGAGAAAACTGGAAACCCTTGGGAGGCCTGGGAACAAAAAACTATTCAGAAGCAACCTGGAAGATTTTTCCCCTTGGAAATTGATTATGGAGTTAACAAACAAGGCGCAAGAAAGAGTAAAGACAATGCAGACAGCAAATTACCCCCTCGAGTGAGAGAATTGATGAAGATGCTCTTTAATGTGGAAACATACAGAGCTGCCATGATGGAGTTTGAGATCAATATGTCCGAAATGCCTCTTGGGAAACTCAGCAAAAGTAATATCCAAAAGGGTTTTGAAGCATTAACAGATATACAGAATCTTTTTACAAGTGGCAATCCTGATTCATCAGTCAGAGATAGCTTGCTTATTGATGCCAGCAATCGGTTCTTCACTGTAATCCCTTCTATTCATCCACATATTATTAGGGACGAGGATGATTTTAAGGCAAAGGTAAAAATGTTGGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCAACAGGGATGACTCGATTGATGATAATTATAAGAAGCTCCGCTGTGCTATATCTCCACTTCCTCATGACAGTGAAGATTTTCGATTAGTCGAGAAGTATCTACATAATACTCATGCCCCCACACATGTGGACTGGAGTCTTGAGCTAGAAGATGTTTTTTCACTTGAAAGACATGGTGAATTTGATAAATATGCTCCTTACAGGAACAAAGTTGGTAATAGAATGCTCTTATGGCATGGTTCTAGGTTGACGAACTTCGTGGGCATTCTTAACCAAGGACTCAGAATCGCACCTCCAGAAGCCCCTGCAACTGGCTACATGTTTGGCAAAGGGATTTACTTTGCTGACCTTGTCAGCAAAAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCCCTTGGAAATGTCTATGAGCTCAAAAAAGCTAAGTATATGGATAAACCTCCGGAAGGAAAGCATTCTACTAAAGGACTGGGAAAGAAAATGCCCCTGGAATCAGATTATGTAAAGTGGAGAGGTGATGTCGTTGTTCCTTGTGGGAAACCAGTGTCATCAAATGTCAAGGCATCTGAGCTCATGTACAATGAGTATATTGTCTATAATACTTCTCAAGTTAAACTGCAATACTTGCTGAAGGTGAGGTTCCATCACAAGAAATGA 3063 0.428 MSNPQNQKPWKAEYAKSGRSSCRTCKSPIASEKLRLGKMVQSSKFDGLMPMWHHADCVMKKANQIKLVDDVENLETLRWEDQQNIRTYIQSSGGGSTSTSKSKSKSTAASASKSSAASASKSSASKNVEYGIEVSQTSRAACKHCGQKIIKGEVRISTKPDGQGPRGLAWHHAKCLLELSPSIQFDNLSGWNSLSSSEQSAVSDLAMKDHPTNKGGGSGTDVETEGVKVSTQQSSSRGGTKRGKDAEGEQMSKAAKVKGDMSVGRGVAVKNADDSGEVGGLENSLEAQSKELWALKDDLKKHVTTAEMREMLEANDQDSTGSELDLRDRCADGMMFGGLCHCPLCSGFLRYSGGMYRCSGYISEWSKCSYSTCEPKRTEGKWKIPKETDNRYLTKWFKSQKGKKPIRILPPPPSKTSAESSISAGQHQSSNSESLADLKVAICGFPKASIDEWKHKIDGIGGVFHAKVKKDTSCLVVSGALKDEAEMRKARRMKVPIVREDYLVDCMERKKKLPFDMYKVEMTGETSSMVTVKVKGQSAVHDASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIEEDKGSDCYVFRKWGRVGSDKIGGSKLEDMSKSDAIREFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLEIDYGVNKQGARKSKDNADSKLPPRVRELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLFTSGNPDSSVRDSLLIDASNRFFTVIPSIHPHIIRDEDDFKAKVKMLEALQDIEIASRLVGFDANRDDSIDDNYKKLRCAISPLPHDSEDFRLVEKYLHNTHAPTHVDWSLELEDVFSLERHGEFDKYAPYRNKVGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPLESDYVKWRGDVVVPCGKPVSSNVKASELMYNEYIVYNTSQVKLQYLLKVRFHHKK* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1384 1020 MobiDBLite consensus disorder prediction 414 430 - -
Psa3g1384 1020 SUPERFAMILY WGR domain-like 527 653 IPR036930 -
Psa3g1384 1020 Gene3D - 338 398 IPR038650 -
Psa3g1384 1020 SUPERFAMILY BRCT domain 431 520 IPR036420 -
Psa3g1384 1020 Gene3D - 120 229 IPR036957 GO:0003677|GO:0008270
Psa3g1384 1020 Gene3D - 2 113 IPR036957 GO:0003677|GO:0008270
Psa3g1384 1020 ProSiteProfiles BRCT domain profile. 430 520 IPR001357 -
Psa3g1384 1020 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 10 93 IPR001510 GO:0003677|GO:0008270
Psa3g1384 1020 SMART zf_PARP_3 133 207 IPR001510 GO:0003677|GO:0008270
Psa3g1384 1020 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Psa3g1384 1020 MobiDBLite consensus disorder prediction 210 258 - -
Psa3g1384 1020 CDD parp_like 671 1015 - -
Psa3g1384 1020 SUPERFAMILY ADP-ribosylation 804 1019 - -
Psa3g1384 1020 Pfam Poly(ADP-ribose) polymerase catalytic domain 815 1016 IPR012317 GO:0003950
Psa3g1384 1020 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 671 805 IPR036616 GO:0003950
Psa3g1384 1020 PIRSF NAD_ADPRT 3 1020 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Psa3g1384 1020 MobiDBLite consensus disorder prediction 240 254 - -
Psa3g1384 1020 Gene3D - 268 337 - -
Psa3g1384 1020 MobiDBLite consensus disorder prediction 399 430 - -
Psa3g1384 1020 SMART PADR1_2 326 379 IPR012982 -
Psa3g1384 1020 Gene3D - 805 1020 - -
Psa3g1384 1020 CDD WGR_PARP1_like 550 655 - -
Psa3g1384 1020 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 50 1014 - -
Psa3g1384 1020 MobiDBLite consensus disorder prediction 1 20 - -
Psa3g1384 1020 MobiDBLite consensus disorder prediction 90 122 - -
Psa3g1384 1020 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 130 204 IPR001510 GO:0003677|GO:0008270
Psa3g1384 1020 MobiDBLite consensus disorder prediction 224 239 - -
Psa3g1384 1020 Pfam Poly(ADP-ribose) polymerase, regulatory domain 671 801 IPR004102 GO:0003950
Psa3g1384 1020 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 215 - -
Psa3g1384 1020 Pfam BRCA1 C Terminus (BRCT) domain 435 507 IPR001357 -
Psa3g1384 1020 SMART WGR_cls 560 643 IPR008893 -
Psa3g1384 1020 Pfam WGR domain 560 638 IPR008893 -
Psa3g1384 1020 Gene3D - 661 804 IPR036616 GO:0003950
Psa3g1384 1020 PANTHER DNA LIGASE 50 1014 - -
Psa3g1384 1020 Pfam PADR1 (NUC008) domain 328 378 IPR012982 -
Psa3g1384 1020 Gene3D BRCT domain 425 524 IPR036420 -
Psa3g1384 1020 SMART BRCT_7 432 510 IPR001357 -
Psa3g1384 1020 ProSiteProfiles PARP alpha-helical domain profile. 670 788 IPR004102 GO:0003950
Psa3g1384 1020 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 133 204 IPR001510 GO:0003677|GO:0008270
Psa3g1384 1020 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Psa3g1384 1020 ProSiteProfiles PARP catalytic domain profile. 795 1020 IPR012317 GO:0003950
Psa3g1384 1020 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 103 - -
Psa3g1384 1020 ProSiteProfiles WGR domain profile. 549 648 IPR008893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1384 Psa-Chr3 124071900 124082333 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1384 K24070 - gmx:100815900 1646.33