Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1293 ATGGGAGACAGTGAACCAATGGTTGCAGAAACATCGGCGGCCGAGTCTTATCCCTTGGACGGTTACAATAACACTAACACAGCATCCAATCCTGTTCCCGAAGTTGGTGCTACTGCTGTTGCCGAGCTTGCAGGAGAAGCTGCTGCTCAGGCTAATTCAAGCTATGAACTTCCTTATTCGGGTGATGGGAGTGTGTATGCTGCTGGGGGTCCGAATTCTGTACTTCAACAAGCTCAATTTAGTGCTGTCAATGAGTCTAAGCAAGCTATTGGAGTGCCTGACGCTAATGATGCCTCAGGTGTGGTTGGAATGGAAGCTACAGATTCTGCTATGATTTCTGGTGAACATTCGTCTTTAAATGGCGGGGTTGATACAACTGGACTTGAAAATGGAAATGCACCAGAGAATGTTGAAGGTTCAGCTGATGAGAAACAACTTACAGATGCTTATGCTGCCTTGTCTGCTGAAGAAGATCGATTGTGGAACATTGTAACAGCTAATTCTTCAGATTTTACTGCTTGGACTTCTCTGATTGAAGAAACAGAGAAGGTGGCAGAGAGCAACATTTTGAAGATCCGTAGAGTCTATGATGCATTCCTAGCAGAATTCCCTTTGTGTTATGGGTATTGGAAGAAATATGCTGACCATGAGGCGCGCCTTAGCTCTGCTGATAAAGTTGTTGAAGTTTATGAGCGTGCTGTTCAAGGGGTTACATATTCGGTGGACATGTGGTTGCATTATTGCATATTTGCCATAAGCACCTATGGGGATTCAGATACAGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCATTTTCTCTTTGGGATAAATACATTGAATATGAGTACATGCAGCAAGATTGGGCGCGTCTTGCGGTGATTTACACCAGAATATTAGAGAATCCAAATCAGCAGTTGGATCGGTATTTTGGCAGCTTCAAGGAGTTGGCTAGTAATCGACCTTTGTCAGAATTACGGACAACTGAGGAAGCTGCTGCAGTGGCAGATGTTGTTCCAGAGGGTGCTGCCCTAGGTGTTGAAGGAGAGGTTCATCCCAATGCTGCAGAGAATTCTCCTAAACATGTTAGTGCTGGATTAACAGAAGCAGAAGAGTTGGAGAAGTATATTGCCATTAGAGAAGAGATGTATAAGAAAGCAAAAGAGTTTGATTCTAAGATCATCGGTTTTGAAACAGCAATCAGGAGACCCTACTTTCATGTACGTCCTCTTAATGTTGGGGAACTTGAGAATTGGCATAGCTATCTGGACTTTATAGAAAGAGAAGGTGACTTAAGCAAGATTGTCAAGTTGTACGAGAGATGTGTCATTGCTTGTGCCAATTATCCCGAGTACTGGATACGTTATGTTTTGTGCATGGAAGCTAGTGAAAGTATGGATCTTGCAAATAATGTTCTTGCTCGGGCGAGCCAAGTCTTTGTCAAGAGACAACCTGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGGCAGGAGATATAGTGGGTGCTAGAGCGGCATATCAACTTGTGCACACTGAAATTTCTCCAGGCCTTCTTGAAGCAATAATCAGGCATGCCAATATGGAACATCGATTGGGGAAGTTAGAGGATGCCTTCTCTTTGTATGAACAGGCCATTGCCATTGAGAAAGGAAAAGAACATTCACAAACACTGCCAATGTTGTTTGCTCAGTATTCTCGATTTGTTTATATGGCTTCTGGAAATGCTGAAAAGGCGAAAGAGATTTTAGTTGGGGGGCTTGAGAATGCTTCACTGTCAAAGGCACTACTTGAGGCTTTATTGCATTTTGAGGCTATTCAACCCCAGCCAAAGCGAGTTGACATTGACTTTCTAGAGTCATTGGTTGTAAAATTCATAATGCCCAACCCAGAGAACCCTGGGGTAGCTAGTGCAACAGAGCGGGAAGAACTTTCTACTATTTTTCTGGAGTTTTTAAATCTTTTTGGAGATGTTCAATCTATCAAAAGGGGTGAGGATAGACATGCCAAATTGTTCTTGCCACACAGGAGCATGTCAGAGTTGAAAAAGCGTCATGCAGATGATTTCTTAGCTTCAGATAAAACAAAAGTGTCAAGAGCTTATTCTGCTCAATCACCGGCCCATTCTGTAACAGGTGCATATCCAAATGCACCTAACCAATGGACTAACTATGGAGTACAGCCTCAAACTTGGCCAGCGACAACACAAGGACAGCAATGGCCTGCTGGCTACACCCAGCCGGCTTCCTATGGAGCTTATACCGGATATGGAGGCAACTATGCTAACCCACAATTGCCTGCACCAGTTCCACAAAGCACTGCTTACGGGGCCTATCCTCCTGCATATCCTGCACAGGCACTTCCTCAACAAAATTATGCACAACCTGCAGCCCCGGCACAGCAACCCGCAGCAGTTCCTCAGGCCTATTACGGGAGTTATTACTGA 2466 0.4404 MGDSEPMVAETSAAESYPLDGYNNTNTASNPVPEVGATAVAELAGEAAAQANSSYELPYSGDGSVYAAGGPNSVLQQAQFSAVNESKQAIGVPDANDASGVVGMEATDSAMISGEHSSLNGGVDTTGLENGNAPENVEGSADEKQLTDAYAALSAEEDRLWNIVTANSSDFTAWTSLIEETEKVAESNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLSSADKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDSDTVRRLFERGLAYVGTDYLSFSLWDKYIEYEYMQQDWARLAVIYTRILENPNQQLDRYFGSFKELASNRPLSELRTTEEAAAVADVVPEGAALGVEGEVHPNAAENSPKHVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHSYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASESMDLANNVLARASQVFVKRQPEIHIFCARFKEQAGDIVGARAAYQLVHTEISPGLLEAIIRHANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYMASGNAEKAKEILVGGLENASLSKALLEALLHFEAIQPQPKRVDIDFLESLVVKFIMPNPENPGVASATEREELSTIFLEFLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRHADDFLASDKTKVSRAYSAQSPAHSVTGAYPNAPNQWTNYGVQPQTWPATTQGQQWPAGYTQPASYGAYTGYGGNYANPQLPAPVPQSTAYGAYPPAYPAQALPQQNYAQPAAPAQQPAAVPQAYYGSYY* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1293 821 SUPERFAMILY TPR-like 164 327 IPR011990 GO:0005515
Psa3g1293 821 SUPERFAMILY TPR-like 379 683 IPR011990 GO:0005515
Psa3g1293 821 SMART hat_new_1 256 291 IPR003107 GO:0006396
Psa3g1293 821 SMART hat_new_1 221 253 IPR003107 GO:0006396
Psa3g1293 821 SMART hat_new_1 187 219 IPR003107 GO:0006396
Psa3g1293 821 SMART hat_new_1 293 326 IPR003107 GO:0006396
Psa3g1293 821 SMART hat_new_1 540 578 IPR003107 GO:0006396
Psa3g1293 821 SMART hat_new_1 436 468 IPR003107 GO:0006396
Psa3g1293 821 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 67 808 - -
Psa3g1293 821 PANTHER PRE-MRNA-PROCESSING FACTOR 39 67 808 - -
Psa3g1293 821 Gene3D Tetratricopeptide repeat domain 416 713 IPR011990 GO:0005515
Psa3g1293 821 Gene3D Tetratricopeptide repeat domain 162 332 IPR011990 GO:0005515
Psa3g1293 821 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1293 Psa-Chr3 117224755 117235477 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1293 K13217 - gmx:100787373 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1293 3 117224755 117235477 Psa3g1293 3 117224755 117235477 ECH