Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1253 ATGGGTTTTGATGAAACTTCGGCTACATCGTTGTCTTCTTCAGGATCATGGTGGAATAATACCCTTTTGACGGAGATCCTTGGATTGCCAGTTTTGGAACTTGTGGCAATATGTACTAATTTGGTTGTTCTTGTTTTGTTTCTTTTGCGGCAGATTTTTTTCTGTTTTGGTGGAAGAGTTTGGTTTTATAAGGATCATAATAATATTAATAATACTGTTGTTGGCAATGGTGGTTTAGTTCGTGCTAGTGTTGTTGGAGAGACTATTGAGGTTAGAATTGGGACGTGGTTCAAGCTGTCGGTGTTGTCTTGTTTTTATGTTCTTTTGGTGCAAGTTTTTGTTTTGGGATTTGATGTTGTTTCTTTGATTAAAGATGAGTTTGTTGTTGTGGATTTCTCTCTTCTTTTGCCACCGTTTCTTCAGGGTTTGGTTTGGATTGTGTTGAGTTTCTCTGCTTTGCATTGCAAATATAAGGTGTCTCAGAAGTTTCCGATTTTGCTGAGGGTTTCTTGGTTTGTGTTGTTTGTTGTTTGTTTGTGTGGTTTATATGTTGATGGGAGAGGGTTTTGGTTGGACAGTTCCAAGCATGTGGCTTCTCATGCTTTGGCGAATTTCGCTGCTACCCCTGCTATTACCTTTCTGTGTATTGTAGCGGTTAGGGGTGTTTCTGGTATACAAGTTTGTCGAAACTCTGAGAATCAACAGCCGTTACTTATTGATGAAGAAGAGGACGAAGAACCGGGTTGCCTTAAGGTTACTCCTTATAGTGATGCTGGACTTTATAGCTTGGCGACTCTGTCTTGGCTTGATCCGATTCTTTCCATTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTCGTTGCGCCTAAAGATAAAGCCAAAACAAATTTTAAGGTTTTGAATTCTTATTGGGAGAAATTGAAGGCTGAGGATTCGCCGACTCAGCCTTCGTTAGCTTGGGCAATTCTCAAATCGTTCTGGAAGGAGGCGGCTCTTAATGCCATTTTTGCTGGTGTCACTACTCTTGTCTCGTATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGAGTGGTATAGAGACTTACCCTCATGAGGGGTATGTCCTTGCAGGGATATTCTTTGTCGCAAAGCTTGTGGAAACGTTTGCAACGAGACAATGGTATCTAGGAGTGGACATCTTGGGGATGCATGTTCGGTCCGCTTTAACTGCGATGGTATATCAAAAGGGGCTTAAGTTATCGAGTATTGCCAGGCAAAGTCACACGAGTGGCGAGATTGTTAATTACATGGCTATTGATGTTCAGAGGGTAGGGGACTACGCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTCGCCCTTGCAATTTTGTATAAGAATGTTGGAATTGCTTCCATTGCCACACTTGTTGCCACAATCATTTCCATTGCAATCACTATTCCTGTGGCTCGAATCCAAGAAGACTATCAAGACAAGTTAATGGCGGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGCTTAAGGAACATGAGGATTCTCAAGCTGCAGGCTTGGGAGGACAGATATCGAATCAGATTGGAGGAGATGCGCGGAGTAGAGTTCAAGTGGCTTAGGAAAGCCCTATATTCTCAGGCTTTCATAACTTTCATGTTCTGGAGCTCACCTATATTTGTTTCAGCCGTCACTTTTGCTACTTGCATAATGTTGGGCGGTCAGCTGACAGCAGGCGGTGTACTTTCGGCTCTAGCTACTTTTAGGATCCTCCAAGAACCTTTGAGGAATTTTCCAGACTTGGTATCTACAATGGCTCAGACAAAAGTTTCTATTGATCGACTAACTTGTTTTCTGCTGGAGGAAGAATTGCAGGAAGATGCAACAATTGTCTTGCCACAGGGTGTTTCTAACATTGCCATAGAAATTAAGGATAGTGAATTCTCTTGGGACCCTTCTTCATCCTCCAGGCCTACTCTTTCAGAGATAAATATGAAAGTTGAAAAAGGGATGCGTGTGGCTGTTTGTGGTACGGTTGGTTCAGGGAAATCGAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGATTTCTGGTGAAGTCAGTGTGTGCGGTTCTGCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATTCTCTTTGGAAGTCTAAAAGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGATCTAGATCTTTTCTCGCATGGAGATCAGACAATTATTGGTGATAGGGGTATAAACCTGAGTGGGGGTCAGAAGCAACGGGTGCAGCTTGCCCGAGCGCTATACCAAGATGCTGACGTTTATCTCCTGGACGATCCCTTCAGTGCAGTTGACGCACACACTGGATCAGAGTTGTTTAGGGAATATATATTGTCGGCACTGGAAAATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATCTGATACTGGTTCTCAAGGAAGGTAGCATCATACAAGCTGGAAAGTATGATGATCTCTTAAAAGCAGGAACAGATTTTAAAGCTCTAGTTTCAGCTCACCATGAAGCGATAGAGGCTATGGATATCCCTAATCACTCATCTGAAGATTCAGAGGAACATTTATCATTGGAGGAATCTGTTATGACAAGTAAGAAATCCATTTGTTCTGTGAATGATGTCGACAGTTTGACAAAGGAAATGCAAGAGGGACCATCGTCTTCCGATCAAAAAACAAATAAGGAGAAGAAGAAAGCTAAAAGATCGAGAAAAAAACAGCTTGTACAGGAAGAGGAGAGGGTTAGAGGTAGAGTTAGCATGAAGGTGTATCTTTCATACATGGCAGCGGCATATAAAGGTTCATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCGTGGGCTAACCCTCAAACAGAAGGAGACAAGCCCAAAGTAACTCCCATGAATCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGTTCATTGTTTATATTTGTTAGGGCTGTTCTAGTCGCTACGTTTGGTCTCGGAGCTGCACAGAAGCTATTTTTGAAGATGCTTAGATGTGTTTTCCATGCACCAATGTATTTCTTTGACTCTACACCCGCTGGAAGGATCTTGAACCGGGTTTCTGTTGATCAGAGTGTTGTGGATCTTGATATCCCTTTTAGACTTGGTGGTTTTGCTGCTACAACAATACAGCTTATCGGTATTGTCGGTGTAATGACAGAAGTTACGTGGCAAGTTTTGCTCTTAGTCATCCCAATGGCCATAGCTTGTTTATGGATGCAGAAATACTACATGGCTTCCTCTAGGGAGCTGGTCCGTATTGTAAGCATCCAGAAATCACCAATTATAAATCTTTTTGGTGAATCAATTGCTGGAGCATCCACAATCAGGGGTTTCGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTTGCACGACCTTTCTTCTACAGTCTTGCTGCTATTGAGTGGCTCTGCCTTCGTATGGAGCTCCTGTCCACCTGTGTATTTTCTTTCTGCATGCTATTGCTTGTTAGCTTTCCCCATGGAAGTATTGACCCTAGCATGGCTGGACTTGCTGTGACATATGGTCTGAATTTAAATGCGCGGTTATCCCGTTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATAATATCTATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCGGCAGTTATTGAAGATTCCCGCCCTTCATCCTTATGGCCTGAAAATGGGACAATTGAAATAGTTGATTTGAAGGTCCGTTACAAAGAAAATCTTCCTTTGGTGCTTCATGGAGTATCATGCATATTTCCTGACGGAAAAGTATCCACAATAGACAACATCAATATTTTACACATCGGTCTTCATGACCTCCGAAGTCATCTCAGTATCATACCACAGGATCCGACCTTGTTTGAAGGGACCATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGACATTTGGGAGGCACTAGATAAGTCTCAACTTGGCGAGATCATCCGCGACAAAGGACAAAAGCTTGATACACCAGTTATAGAAAATGGAGACAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGCCGAGCTCTATTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCCGTTGACACTGCCACTGACAATCTTATCCAGAAGATTATTCGAACAGAGTTCAAAGCCTGCACTGTCCTCACCATTGCACATCGTATCCCTACTGTCATCGACAGCGATCAAGTTTTGGTGCTCAGTGATGGTCGAGTTGCTGAATTTGACACTCCTTTACGACTATTAGAGGATAAGTCATCCATGTTTCTAAAGTTGGTGTCTGAGTATTCGTCGCGGTCGAGTGGTATACCAGAATTTTAG 4536 0.4215 MGFDETSATSLSSSGSWWNNTLLTEILGLPVLELVAICTNLVVLVLFLLRQIFFCFGGRVWFYKDHNNINNTVVGNGGLVRASVVGETIEVRIGTWFKLSVLSCFYVLLVQVFVLGFDVVSLIKDEFVVVDFSLLLPPFLQGLVWIVLSFSALHCKYKVSQKFPILLRVSWFVLFVVCLCGLYVDGRGFWLDSSKHVASHALANFAATPAITFLCIVAVRGVSGIQVCRNSENQQPLLIDEEEDEEPGCLKVTPYSDAGLYSLATLSWLDPILSIGAKRPLELKDIPLVAPKDKAKTNFKVLNSYWEKLKAEDSPTQPSLAWAILKSFWKEAALNAIFAGVTTLVSYVGPYMISYFVDYLSGIETYPHEGYVLAGIFFVAKLVETFATRQWYLGVDILGMHVRSALTAMVYQKGLKLSSIARQSHTSGEIVNYMAIDVQRVGDYAWYLHDMWMLPLQIVLALAILYKNVGIASIATLVATIISIAITIPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEFKWLRKALYSQAFITFMFWSSPIFVSAVTFATCIMLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSIDRLTCFLLEEELQEDATIVLPQGVSNIAIEIKDSEFSWDPSSSSRPTLSEINMKVEKGMRVAVCGTVGSGKSSFLSCILGEIPKISGEVSVCGSAAYVSQSAWIQSGTIEENILFGSLKDKAKYKNVLHACSLKKDLDLFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTGSELFREYILSALENKTVIFVTHQVEFLPAADLILVLKEGSIIQAGKYDDLLKAGTDFKALVSAHHEAIEAMDIPNHSSEDSEEHLSLEESVMTSKKSICSVNDVDSLTKEMQEGPSSSDQKTNKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGSLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDKPKVTPMNLLLVYMALAFGSSLFIFVRAVLVATFGLGAAQKLFLKMLRCVFHAPMYFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFAATTIQLIGIVGVMTEVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFYSLAAIEWLCLRMELLSTCVFSFCMLLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAVIEDSRPSSLWPENGTIEIVDLKVRYKENLPLVLHGVSCIFPDGKVSTIDNINILHIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKDIWEALDKSQLGEIIRDKGQKLDTPVIENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRTEFKACTVLTIAHRIPTVIDSDQVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVSEYSSRSSGIPEF* 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1253 1511 MobiDBLite consensus disorder prediction 917 948 - -
Psa3g1253 1511 Pfam ABC transporter 1293 1430 IPR003439 GO:0005524
Psa3g1253 1511 Pfam ABC transporter 666 800 IPR003439 GO:0005524
Psa3g1253 1511 Gene3D ABC transporter type 1, transmembrane domain 935 1274 IPR036640 GO:0005524|GO:0016021
Psa3g1253 1511 Gene3D ABC transporter type 1, transmembrane domain 304 630 IPR036640 GO:0005524|GO:0016021
Psa3g1253 1511 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1325 1511 - -
Psa3g1253 1511 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 90 1322 - -
Psa3g1253 1511 CDD ABCC_MRP_domain1 647 848 - -
Psa3g1253 1511 Gene3D - 1276 1500 IPR027417 -
Psa3g1253 1511 Gene3D - 642 876 IPR027417 -
Psa3g1253 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 870 IPR027417 -
Psa3g1253 1511 CDD ABC_6TM_ABCC_D2 974 1268 IPR044726 GO:0140359
Psa3g1253 1511 Pfam ABC transporter transmembrane region 976 1218 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g1253 1511 Pfam ABC transporter transmembrane region 336 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g1253 1511 SUPERFAMILY ABC transporter transmembrane region 973 1275 IPR036640 GO:0005524|GO:0016021
Psa3g1253 1511 ProSitePatterns ABC transporters family signature. 773 787 IPR017871 GO:0005524
Psa3g1253 1511 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1499 IPR003439 GO:0005524
Psa3g1253 1511 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 647 871 IPR003439 GO:0005524
Psa3g1253 1511 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 333 613 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa3g1253 1511 CDD ABCC_MRP_domain2 1291 1483 - -
Psa3g1253 1511 CDD ABC_6TM_ABCC_D1 334 621 IPR044746 GO:0140359
Psa3g1253 1511 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1325 1511 - -
Psa3g1253 1511 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 90 1322 - -
Psa3g1253 1511 SUPERFAMILY ABC transporter transmembrane region 321 627 IPR036640 GO:0005524|GO:0016021
Psa3g1253 1511 SMART AAA_5 675 856 IPR003593 -
Psa3g1253 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1283 1495 IPR027417 -
Psa3g1253 1511 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 976 1246 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1253 Psa-Chr3 113484575 113490875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1253 647 864 Calmodulin-binding Proteins AT2G36910 31.197 3.05e-22 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1253 3 113484575 113490875 Psa3g1253 3 113484575 113490875 ECH
Psa3g1253 3 113484575 113490875 Psa6g1490 6 72076303 72083796 PCT