Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1127 ATGAAGAAGCAATTGACAGGTTTAAGGGGTGATTCTCACCTTCACTCGGCTATTCGAGTTGGGAATTTGGAGTTGGTGTTGGAAATTATCTCTGAGAGTCAAGGTGAAGAATTGAAGGAGTTGTTTTCAATGAGAAATAACTCTAGTGAAACTGCCTTGTATATTGCTGCTGAAAATGGTCATCTTGATATAGTCAAGGAATTGATCAAATATCATGATATTGGGTTGGCTAGCTTGAAAGCTAGAAATGGATTTGATGCTTTTCATGTTGCTGCTAAAAATGGAAATTTGGAGATATTGAAGGTCCTCACAGATGCATTTCCTGAAATTTCTATGACGGTTGATCTGACAAATACTACTGCACTGCACACTGCTGTGTCACAAGGTCATATTGAGGTAGTAAATTTTCTCTTGGAGAAAAGCAGCAGCGTCGTAACTATAGCAAAAAGTAACGGAAAAACTGCATTTCATTCTGCTGCAAGAAATGGCCATGTGGATGTCATCAAGGCCCTGCTTAGCAGTGAACCTGAAATCGCAATGAGAATTGATAAGAAGGGGCAAACTGCACTCCATATGGCAGTTAAAGGACAAAATCTGGAGGTAGTAGACGAGCTTTTGAAACTGAACCCGTCTTTTGCTAATATGGTGGATGCCAAGGGAAACACCGCGCTGCATATAACAACCCGGAAGGGTCGTTTACAGATTGTTCAGAAGCTACTAGATTGCAAAGAAATAGACACTGATGTTATTAATAAATCTGGAGAAACAGCTTTAGATATTGCTGAGAGAAATGGTCGCTTGGACATCGCCAAATATTTGCAGGATCGTGGAGCTCAAAATGCTAGGTCCGTAAGGTCTCCTTCTGCGAACAGAGCCCTTGAACTCAAACGAACTGTGAGTGACATAAAAAGCGGGGTTCATAACCAGCTGGAACACACGTTTAAAACACAGAGGCGTATGAAGGGCATAGCAAAGCGAATTAACAAGATGCAGGCTGAGGGGCTTAACAATGCGATAAACTCCAACACCATAGTTGCTGTCCTCATTGCAACAGTTGCTTTTGCTGCCATATTTACTGTCCCAGGCCAATATCCTCAGAACACGAAGCAACTCGCTCCTGGAATGTCTCCTGGGGAAGCCAATATCGCTCCCAATATTGAGTTCTTGATATTCGTAATCTTCGATTCTACTGCCCTTTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTAGTTGTTATTGAAAGGGAAGCAAAGAAACAAATGACGGCGATTATAAATAAGTTAATGTGGATAGCCTGTGTGTTAATTTCTGTGGCCTTTCTCGCAATGTCATACATAGTTGTCGGGGATCAGAAAGAATTGGCTATTGCAGCCACAGCTCTTGGAACGGTGATTATGGCAGCTACTCTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCTCGAGTCCTCCAGATTACGAAGTCTTAGAACAATGACGAGCAGTAGGCAGTCATTGACTATGTCAGGGGTCTCAGCTTCCGAGAACGAGTACAAAGCAGTGTTCGCATTATAA 1563 0.4235 MKKQLTGLRGDSHLHSAIRVGNLELVLEIISESQGEELKELFSMRNNSSETALYIAAENGHLDIVKELIKYHDIGLASLKARNGFDAFHVAAKNGNLEILKVLTDAFPEISMTVDLTNTTALHTAVSQGHIEVVNFLLEKSSSVVTIAKSNGKTAFHSAARNGHVDVIKALLSSEPEIAMRIDKKGQTALHMAVKGQNLEVVDELLKLNPSFANMVDAKGNTALHITTRKGRLQIVQKLLDCKEIDTDVINKSGETALDIAERNGRLDIAKYLQDRGAQNARSVRSPSANRALELKRTVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMQAEGLNNAINSNTIVAVLIATVAFAAIFTVPGQYPQNTKQLAPGMSPGEANIAPNIEFLIFVIFDSTALFISLAVVIVQTSVVVIEREAKKQMTAIINKLMWIACVLISVAFLAMSYIVVGDQKELAIAATALGTVIMAATLGTLCYWVIAHRLESSRLRSLRTMTSSRQSLTMSGVSASENEYKAVFAL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1127 520 SMART ANK_2a 219 249 IPR002110 GO:0005515
Psa3g1127 520 SMART ANK_2a 253 283 IPR002110 GO:0005515
Psa3g1127 520 SMART ANK_2a 151 180 IPR002110 GO:0005515
Psa3g1127 520 SMART ANK_2a 117 147 IPR002110 GO:0005515
Psa3g1127 520 SMART ANK_2a 48 76 IPR002110 GO:0005515
Psa3g1127 520 SMART ANK_2a 83 112 IPR002110 GO:0005515
Psa3g1127 520 SMART ANK_2a 185 214 IPR002110 GO:0005515
Psa3g1127 520 SMART ANK_2a 9 40 IPR002110 GO:0005515
Psa3g1127 520 ProSiteProfiles Ankyrin repeat profile. 253 279 IPR002110 GO:0005515
Psa3g1127 520 SUPERFAMILY Ankyrin repeat 14 278 IPR036770 -
Psa3g1127 520 ProSiteProfiles Ankyrin repeat profile. 219 241 IPR002110 GO:0005515
Psa3g1127 520 ProSiteProfiles Ankyrin repeat region circular profile. 151 173 - -
Psa3g1127 520 Pfam Ankyrin repeats (3 copies) 151 207 IPR002110 GO:0005515
Psa3g1127 520 Pfam Ankyrin repeats (3 copies) 217 279 IPR002110 GO:0005515
Psa3g1127 520 Pfam Ankyrin repeats (3 copies) 10 74 IPR002110 GO:0005515
Psa3g1127 520 Pfam Ankyrin repeats (3 copies) 83 143 IPR002110 GO:0005515
Psa3g1127 520 ProSiteProfiles Ankyrin repeat region circular profile. 48 70 - -
Psa3g1127 520 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 520 - -
Psa3g1127 520 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Psa3g1127 520 ProSiteProfiles Ankyrin repeat region circular profile. 219 241 - -
Psa3g1127 520 ProSiteProfiles Ankyrin repeat profile. 48 70 IPR002110 GO:0005515
Psa3g1127 520 ProSiteProfiles Ankyrin repeat region circular profile. 253 279 - -
Psa3g1127 520 ProSiteProfiles Ankyrin repeat region circular profile. 117 144 - -
Psa3g1127 520 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Psa3g1127 520 Pfam Domain of unknown function 333 449 IPR026961 -
Psa3g1127 520 ProSiteProfiles Ankyrin repeat profile. 83 115 IPR002110 GO:0005515
Psa3g1127 520 ProSiteProfiles Ankyrin repeat region circular profile. 185 207 - -
Psa3g1127 520 Gene3D - 212 342 IPR036770 -
Psa3g1127 520 Gene3D - 1 144 IPR036770 -
Psa3g1127 520 Gene3D - 145 211 IPR036770 -
Psa3g1127 520 ProSiteProfiles Ankyrin repeat profile. 185 207 IPR002110 GO:0005515
Psa3g1127 520 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1127 Psa-Chr3 103838083 103841537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1127 1 520 Miscellaneous Gene Families AT1G07710 61.217 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1127 - - gmx:100787392 820.076