Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1078 ATGAGAGATTTTGTGATCCTCGGTTCTTCCATCATCACTCCCCCTCCCAACTCTCACCCACCACCCTCCTCCTCCTCCTCCCCCTCTTCCACTCCTCAACACCGTCACCCAATCATCAAACCCTACAAACCATCCTCTCTTCCAAAGCTCAATCCTTTATCTCCACTGAACAATTCTTCCACCCTTCTTCAAACCCCTCTCAAACTCAAAGAATTCGATACCCTTGAGATTGATTCCGAGGTCAATGCTGAGAAATTAGCCAATGCGGTTCTTGTAGGTATCAAAGACAAGAATGTTCGGAGTGTGATTGAGAGTTTGAACAAAGTGGAGGGTCTTGGTGGGGTTTCTTTGTCTGCTCATCTTGATGCTTTTGTCGTTGCAAATGAGTGTCGTCAATTGGTTACAAGTGGACACATTGAAGAAGCTGTTGAATTGATGGAGGTTCTCTCACGTTTCCGGTTATCAATTGCAGAACTTGTTCAGCCAAATGACATTATAAAAAGATGTGTTCTTAGTCATAAACCAACATTAGCTGCGAGGTATGCATCCCTTCTTCCGCAAGCACATACATCGATTTGCCGCATTATATCAGAATTTGGCAAAAAGAGGGATTTGGTTTCTGCTCTGAAAGCTTACGATGCTTCGAAGAAGAACTTGAAAAGTCCCAATAATATGTACGTATATCGGGCAATAGTTGATGCCTGTGGTCTCTGTGGTGATTTCATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAAATCACTCCCAATATTTATGTGTTCAACAGTCTCATGAATGTGAATGCCCATGATTTCAGCTACTCGATAAATCTACTTCAGAAAATGCAGAAGCTAGGCCTGAAACCCGATATGACATCCTATAACATCCTACTAAAAGCATGCTGTGTTGCTGGAAGAGTTGACCTTGCCCAAGACATGTATAAAGAACTTAAGCATTTGGAGTCTGTGGGACAACTGAAGTTAGATGTTTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAATTATGGCAAATGGCTCTAAAAATTAAGCGCGACATGCTCTCTGCTGGTGTTTCTCTTAATACTGTTGCGTGGTCATCATTAATCAATGCATGTGCACATGCAGGACTTGTGGATCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGTGAACCTAATACACAGTGTTTCAACACCATTTTAAATGCATGTGTTGAAGGTTATCAGTATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAATAAGATGTCAGCGTCCTTTGATGAAAGCAACAATAACAATTCAGAGCAGGGAGACATGCATAATGTCACCACAGTACCAACAGGCACTACTAGTTCACATATCTTGAGTTTTACCGAGAGGTTCCCTTTCGCACCAACTACATCGACGTACAATATTTTACTGAAGGCTTGTGGTACTAATTACTATCATGCGAAAGCAGTAATCAACGAGATGAGAACAGTTGGTCTTTCCCCTAATCAAATAAGCTGGACAATTTTGGTAGATATATGTGGAAGATCAGAAAACGTGGATGGTGCCGTTGAGATTTTGAGAACCATGATTGATGCTGGAATTAAACCCGATGTTGTTGCATATACATCCGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTCCGCAAGCACTAACACTATATGAAGAAATGAAAAGCTACGGAACACTTCCAAATTTGGCGACATATAATACACTTCTAAGGGCACGGAGCAATTATGGATCCTTACATGAAGTGCAACAGTGTTTGGCTATATATCAGGATATGCGGAAGGCAGGGTACAAACCCAATGACTACTATCTGGAGGAGCTGATTGAGGAGTGGTGTGAAGGAGTAATACAAGACAGCGGAGAGTACAAATGTGAATTTTCTTACAGCAACAAACCTGAAATAGAGAGACCTAAGAGTTTACTTCTTGAAACAATTGCGGCACATCTACTAAAGAGAGTAGCCGGCATCTTAGCAATTGATATTCAAGGGCTCACAAAGGTTGAAGCTCGCCTGGTCATTCTCGGAGTTCTTCGAATGATCAAAGAGAACTATGCTTTTGGGTATTCAGTGAATGATGACATCTTGATCATCATAGGGGCTACCAAAGCAGATGAAAGTCCATCCGAAGACATATTAGAAGTGCAAGAGGCTATTATCAAACTTCTTTGGAATGAATTGGGGCTTGAGGCTCTTCCAGCAAAAACCAGATTTGCACCAAATGACACACCAAAGTTACAGAACCCCAAACGTTCAAATCTCACCCTAAAAGCACTGCCAGCAGATAATGCACTACCCACGACAACGGGTTTCCACACAAGGAGACCAGCAGTTCTACAAAGACTGAAGGTCACCAAAAATTCGTTACACCGTTGGTTACAGAGGAAAGCGTAA 2445 0.4155 MRDFVILGSSIITPPPNSHPPPSSSSSPSSTPQHRHPIIKPYKPSSLPKLNPLSPLNNSSTLLQTPLKLKEFDTLEIDSEVNAEKLANAVLVGIKDKNVRSVIESLNKVEGLGGVSLSAHLDAFVVANECRQLVTSGHIEEAVELMEVLSRFRLSIAELVQPNDIIKRCVLSHKPTLAARYASLLPQAHTSICRIISEFGKKRDLVSALKAYDASKKNLKSPNNMYVYRAIVDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDFSYSINLLQKMQKLGLKPDMTSYNILLKACCVAGRVDLAQDMYKELKHLESVGQLKLDVFTYSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTVAWSSLINACAHAGLVDQAIQLFEEMLLAGCEPNTQCFNTILNACVEGYQYDRAFRFFHSWKGNKMSASFDESNNNNSEQGDMHNVTTVPTGTTSSHILSFTERFPFAPTTSTYNILLKACGTNYYHAKAVINEMRTVGLSPNQISWTILVDICGRSENVDGAVEILRTMIDAGIKPDVVAYTSAIKVCVESKNFPQALTLYEEMKSYGTLPNLATYNTLLRARSNYGSLHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQDSGEYKCEFSYSNKPEIERPKSLLLETIAAHLLKRVAGILAIDIQGLTKVEARLVILGVLRMIKENYAFGYSVNDDILIIIGATKADESPSEDILEVQEAIIKLLWNELGLEALPAKTRFAPNDTPKLQNPKRSNLTLKALPADNALPTTTGFHTRRPAVLQRLKVTKNSLHRWLQRKA* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1078 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 322 IPR002885 -
Psa3g1078 814 MobiDBLite consensus disorder prediction 10 37 - -
Psa3g1078 814 Pfam PPR repeat family 366 413 IPR002885 -
Psa3g1078 814 Pfam Pentatricopeptide repeat domain 480 522 IPR002885 -
Psa3g1078 814 Pfam Pentatricopeptide repeat domain 533 590 IPR002885 -
Psa3g1078 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Psa3g1078 814 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 69 806 - -
Psa3g1078 814 Pfam PPR repeat 333 363 IPR002885 -
Psa3g1078 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Psa3g1078 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Psa3g1078 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Psa3g1078 814 Gene3D Tetratricopeptide repeat domain 323 465 IPR011990 GO:0005515
Psa3g1078 814 Gene3D Tetratricopeptide repeat domain 189 322 IPR011990 GO:0005515
Psa3g1078 814 Gene3D Tetratricopeptide repeat domain 466 656 IPR011990 GO:0005515
Psa3g1078 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Psa3g1078 814 Pfam Pentacotripeptide-repeat region of PRORP 196 319 IPR033443 -
Psa3g1078 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 617 IPR002885 -
Psa3g1078 814 PANTHER OS03G0284900 PROTEIN 69 806 - -
Psa3g1078 814 TIGRFAM PPR: pentatricopeptide repeat domain 512 546 IPR002885 -
Psa3g1078 814 TIGRFAM PPR: pentatricopeptide repeat domain 547 580 IPR002885 -
Psa3g1078 814 TIGRFAM PPR: pentatricopeptide repeat domain 295 320 IPR002885 -
Psa3g1078 814 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Psa3g1078 814 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1078 239 637 Glycosyltransferase AT1G05670 23.501 2.28e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1078 - - gmx:100794606 1130.93