Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0978 ATGGCAGCCGGAGCAGATCCTCTATTCGATAATTTAGTAATGGATGAATTTTTTGACGATGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGAAGAGTATGTTCCCGATGTGCAGTCGTCTAGGGTTTCTCACGGTCGCCGGAATCCTACATCTGACGAAGTAATAGTTGTTCTCGACGATGAACGGCAAAATTCAGTTGAAGACGACAGAAACAAACGCCGCAGAACTGAAGGAGGAGAGGCTTCAGCTTCTTCGATCCCGATCGAAAGTGCCGACGGCAGTCAAGAGAATGACTGGAACCGCACCGAGGTTGACGGCCTCATTTGCCCTATTTGTATGGATGCTTGGACCGATGACGGCGATCATCACGTCTGTTGTCTTCCTTGTGGACACATTTATGGCATGTCTTGCATCAAAAAATGGCTTAAACAGCGACGCAATTCGGGGAAGTGTCCTCAATGTAATATGGAATGTTCCATGAAAGATGTGAGGAAACTCTATGCTTCCCGAGTGGTTGCTGTTGATGAAGAATCTGATAAGAGAATTCGGTCACTTGAGACCAAATGTGCTTCTCTTGAGAGTAAGGATGGTGATTGGCGCAAGAAAGAAGCGGGATGGAAGAAGAGAGAAGCTGCATTGCATCTTGATGTTAAGAACCTTAAGGAGAAAAACACTTATTTGGAGCAGCTGTTACTAGATATGCAAAGTAGACAATCCGGATTAATGGATGTCACTGGGACTTCTCAATGGAGATATGAATCTGAGCGAAACTATAACCCAATGTCCCATGGAGAAGGATCATTTTGCAATTTTGTATTTCAGAAAGCATTTCCACTGGAAGGTGCCCGCATATTTGATATGGACACTTACAATCAAATTGTATTAATTGCACATAAACCAAAAGCAATAGGTGATGTGCACTTGCTATCTAAATTGAGCTTAATATCTCCATTTGAGATGCAAGATATTGTATTGCCTTCATCTGCAAATGGTGTCAGAGACATGCACATTTCTCCTTTCGATAATACACAGGTCCTCTATGCTTCATTAGGGAAGAAATTATCAGTGCTCAGCTTCCTCAGTGGCACCCCTGTTCTCGATTATAATCTACAGGTTCCTGCTTGGTCCTGCTCATGGGATCGTAACAGTACACATTACATATATGCTGGACTACAGAATGGTTCTGTTCTGGTGTTTGATACGAGACAAACTGCAGGACCCTTAAAGTGTTTAGCTGGGTTAACTAGCAACCCTGTTCATAGCTTGCAGTCTCTTGCACAAACATCGAGTCTTCCGTCTGGTGCCAGAAGTATCCTATCCGCATCTGCCATCGGGCCTTGTCAATGGAACATTGATTCTGAAGAACGGTTTGTAGTTCCCGAGCCTTATGATCCTGATGCTTATGATCAAGGAGTTTGTATATCCCTTGCTTATTGCCCGAGCAGTGATGACATTGTTGTTTCGCACCGTCCAAAGTTCAACACCTTGGTGGATGTGCCTAATTCTCAATTTTGGCCTACTCCTTATGTTACTGGACAAGGAGTACAGGGCTCTCACGTATTGTTAAAGAGAACTGGCTGTGATAATTACCAAAAGATGGGTTCCTCGAATGCCAATGTAAGTGATATTCGACTACCAAAATGTGTAATTATAGACACTCAGAATCAAAATAGATTATTTGTATCCGGAGATGAAGCTACATGCGACATGGTCTTGCAAGAGTTGCCATCTTTTAGAACCATTCAGCGATTCGAAATGCCAGCTCAGGTTCGTGATGTTAGGTACTCACCTAGTCATGGAATGCTTGGGTGTTTAACTGGCAATTCATTGCAACTGTTCCGTACCAATCTCAAGTGA 1869 0.4307 MAAGADPLFDNLVMDEFFDDEEEEEEEEEEEEDDEEYVPDVQSSRVSHGRRNPTSDEVIVVLDDERQNSVEDDRNKRRRTEGGEASASSIPIESADGSQENDWNRTEVDGLICPICMDAWTDDGDHHVCCLPCGHIYGMSCIKKWLKQRRNSGKCPQCNMECSMKDVRKLYASRVVAVDEESDKRIRSLETKCASLESKDGDWRKKEAGWKKREAALHLDVKNLKEKNTYLEQLLLDMQSRQSGLMDVTGTSQWRYESERNYNPMSHGEGSFCNFVFQKAFPLEGARIFDMDTYNQIVLIAHKPKAIGDVHLLSKLSLISPFEMQDIVLPSSANGVRDMHISPFDNTQVLYASLGKKLSVLSFLSGTPVLDYNLQVPAWSCSWDRNSTHYIYAGLQNGSVLVFDTRQTAGPLKCLAGLTSNPVHSLQSLAQTSSLPSGARSILSASAIGPCQWNIDSEERFVVPEPYDPDAYDQGVCISLAYCPSSDDIVVSHRPKFNTLVDVPNSQFWPTPYVTGQGVQGSHVLLKRTGCDNYQKMGSSNANVSDIRLPKCVIIDTQNQNRLFVSGDEATCDMVLQELPSFRTIQRFEMPAQVRDVRYSPSHGMLGCLTGNSLQLFRTNLK* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0978 622 CDD mRING-C3HGC3_RFWD3 109 159 - -
Psa3g0978 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 227 IPR013083 -
Psa3g0978 622 Pfam Ring finger domain 113 159 IPR001841 -
Psa3g0978 622 Gene3D - 286 613 IPR015943 GO:0005515
Psa3g0978 622 SMART ring_2 113 158 IPR001841 -
Psa3g0978 622 PANTHER RFWD3 PROTEIN 19 618 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Psa3g0978 622 SUPERFAMILY WD40 repeat-like 333 619 IPR036322 GO:0005515
Psa3g0978 622 SUPERFAMILY RING/U-box 103 165 - -
Psa3g0978 622 ProSiteProfiles Zinc finger RING-type profile. 113 159 IPR001841 -
Psa3g0978 622 MobiDBLite consensus disorder prediction 13 38 - -
Psa3g0978 622 Coils Coil 14 34 - -
Psa3g0978 622 Coils Coil 221 241 - -
Psa3g0978 622 MobiDBLite consensus disorder prediction 57 83 - -
Psa3g0978 622 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 19 618 - -
Psa3g0978 622 MobiDBLite consensus disorder prediction 1 103 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0978 K15691 - gmx:100818898 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0978 3 91601500 91611864 Psa3g0978 3 91601500 91611864 ECH