Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0956 ATGGCGGTAACTTCAACATCACTCGCTTCTCAACTCTCCATTGGCCTCCGCCCCCACCACCCTTCCCCCAAACTCGATTCCCTCTCTTCCCAATCTCTCTCCTTCTTCGATCCCAATATTCGCCTTTCCGTCTCTTCCCCCAAACCCTCCCGTACCGTTATCGCCATGGCTGGTTCTGGAAAGTTCTTTGTTGGTGGCAATTGGAAGTGTAATGGAACAAAAGACTCCATCACTAAGCTTATCGCTGATTTGAACAATGCAAAATTGGAGCCTGATGTTGATGTTGTTGTTGCACCTCCCTTTGTGTACATCGATCAGGTGAAAACCTCAATTACAGATAGGATTGAAGTATCTGGTCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACCGGAGAAATCAGTGTGGAACAACTGAAAGACCTTGGATGCAAGTGGGTTATTCTTGGACATTCTGAGAGAAGGCATGTTATTGGAGAAAAGGATGAGTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCGAGGGTCTTGGAGTGATCGCATGCATTGGGGAATTGTTGGAAGAAAGAGAAGCTGGGAAAACTTTTGATGTCTGTTTCCAACAGTTGAAGGCTTATGCAGATGCGGTGCCTAGTTGGGATAATATTGTTATTGCATATGAACCTGTATGGGCCATTGGAACTGGCAAAGTGGCCTCTCCCGAGCAAGCTCAAGAAGTGCATATAGCTCTTCGTGATTGGTTAAAAAATAATGTCTCAGCTGAAGTTGCGTCTAAAACACGAATTATTTATGGAGGTTCTGTAAACGGAGGGAACAGTGCCGAGCTTGCAAAGAAAGAAGACATCGATGGATTTCTTGTTGGCGGTGCTTCATTAAAGGGTCCTGAGTTTGCCACCATTGTCAATTCAGTGACATCGAAGAAAGTCGCGGCTTGA 936 0.4541 MAVTSTSLASQLSIGLRPHHPSPKLDSLSSQSLSFFDPNIRLSVSSPKPSRTVIAMAGSGKFFVGGNWKCNGTKDSITKLIADLNNAKLEPDVDVVVAPPFVYIDQVKTSITDRIEVSGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHIALRDWLKNNVSAEVASKTRIIYGGSVNGGNSAELAKKEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0956 311 TIGRFAM tim: triose-phosphate isomerase 63 293 IPR000652 GO:0004807
Psa3g0956 311 ProSitePatterns Triosephosphate isomerase active site. 219 229 IPR020861 GO:0004807
Psa3g0956 311 SUPERFAMILY Triosephosphate isomerase (TIM) 59 304 IPR035990 GO:0004807
Psa3g0956 311 CDD TIM 62 302 IPR000652 GO:0004807
Psa3g0956 311 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 61 303 IPR000652 GO:0004807
Psa3g0956 311 PANTHER TRIOSEPHOSPHATE ISOMERASE 1 309 IPR000652 GO:0004807
Psa3g0956 311 Hamap Triosephosphate isomerase [tpiA]. 60 303 IPR022896 GO:0004807|GO:0006096
Psa3g0956 311 Pfam Triosephosphate isomerase 63 303 IPR000652 GO:0004807
Psa3g0956 311 Gene3D Aldolase class I 44 310 IPR013785 -
Psa3g0956 311 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0956 Psa-Chr3 89525339 89529647 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0956 K01803 - gmx:100799358 528.865