Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0948 ATGAGTTCATCCTCAGGCCAGACTACTACTGGCCATGATCTCTCTTTCAAGATCTTACTCATCGGTGATTCTGGTGTTGGAAAAAGTTGCCTACTCGTTACCTTCATTTCCAGTTCATCTATCGAAGATCTTTCACCAACCATTGGTGTTGATTTTAAGATCAAAACACTCACTGTAGGTGGGAAGAGATTAAAACTTACAATTTGGGACACAGCTGGGCAGGAAAGGTTCAGGACTCTAACAAGTTCTTACTATAGAGGAGCGCAAGGAATTATTCTCGTTTATGATGTCACGAAGAGAGAAACCTTTACAAATTTATCTGAAGTGTGGTCTAAGGAATTGGAACTCTATTCAACTAACCAGGAGTGCGTGAAGATGCTAGTTGGAAATAAAGTTGACAGAGATTCTGAAAGGGCTGTGAGCAAGGAAGAGGGATTAGCCCTTGCTAAAGAATTGGGGTGTTTGCTTCTTGAATGTAGTGCTAAAACTCGAGAGAATGTGGAGAAGTGCTTTGAAGAACTCGCTCTAAAGATAATGGAGGCGCCTAGTCTATTGGAAGAAGGATCAACAGCAATAAAAAGAAATGTTTTAAAACAGAAACAAGAACCACAAGCACCACGGAACGGCGGCTGTTGCTCTTAA 642 0.4128 MSSSSGQTTTGHDLSFKILLIGDSGVGKSCLLVTFISSSSIEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTKRETFTNLSEVWSKELELYSTNQECVKMLVGNKVDRDSERAVSKEEGLALAKELGCLLLECSAKTRENVEKCFEELALKIMEAPSLLEEGSTAIKRNVLKQKQEPQAPRNGGCCS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0948 213 Pfam Ras family 17 179 IPR001806 GO:0003924|GO:0005525
Psa3g0948 213 Gene3D - 10 212 IPR027417 -
Psa3g0948 213 ProSiteProfiles small GTPase Arf family profile. 9 179 - -
Psa3g0948 213 ProSiteProfiles small GTPase Rho family profile. 9 181 - -
Psa3g0948 213 SMART ras_sub_4 13 181 - -
Psa3g0948 213 SMART arf_sub_2 1 182 - -
Psa3g0948 213 SMART ran_sub_2 21 212 - -
Psa3g0948 213 PRINTS Transforming protein P21 ras signature 16 37 - -
Psa3g0948 213 PRINTS Transforming protein P21 ras signature 39 55 - -
Psa3g0948 213 PRINTS Transforming protein P21 ras signature 57 79 - -
Psa3g0948 213 PRINTS Transforming protein P21 ras signature 121 134 - -
Psa3g0948 213 PRINTS Transforming protein P21 ras signature 156 178 - -
Psa3g0948 213 PANTHER DRAB5-RELATED 1 213 - -
Psa3g0948 213 SMART rab_sub_5 16 181 - -
Psa3g0948 213 ProSiteProfiles small GTPase Rab1 family profile. 11 212 - -
Psa3g0948 213 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 213 - -
Psa3g0948 213 SMART rho_sub_3 18 182 IPR001806 GO:0003924|GO:0005525
Psa3g0948 213 CDD Rab18 16 178 - -
Psa3g0948 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 201 IPR027417 -
Psa3g0948 213 TIGRFAM small_GTP: small GTP-binding protein domain 16 173 IPR005225 GO:0005525
Psa3g0948 213 ProSiteProfiles small GTPase Ras family profile. 6 213 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0948 Psa-Chr3 88991185 88994581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0948 11 193 EF-hand Containing Proteins AT5G27540 26.984 1.63e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0948 K07910 - gmx:100799887 359.762