Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0893 ATGCGGGGTTGTGTTTCCGCGTGGGTGGCCTTGGCCGCATTGGCAGTGACGGTTACGGTTGTATACGGCGGTTTCCCGGCGAGTTTTCTTCCTCTTGAACGGACTATCCCTCTTAACCACCGAGTTGAACTGACGACACTCAGAGCTCGCGACAGAGCTCGTCACGGTCGAATCTTGCAAGATACTGGCATTCTCGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTAGTTGGGCTGTATTTCACGAAAGTGAAGATGGGTTCTCCTGCCAAAGAATTTTCCGTTCAGATTGATACTGGAAGTGATATCTTGTGGCTTAATTGCAATACTTGCAATAATTGCCCCCAATCTAGTGGCTTAGGGATTGAGCTCAATTTCTTTGACACGGCTAGTTCGTCCACTGCTGCACTGGTTTCCTGCTCGGATCCGGTGTGTTCTTATGCGGTTCAAACTGCCACAAGTCAATGCTCGTCTCAGGTTAATCAGTGCAGCTACACCTTTCAATATGGGGATGGAAGTGGGACATCCGGTTATTATGTTTATGATGCCATGTATTTTGACGTGATCATGGGACAGTCTGTGTTTTCTAACTCTTCTTCTACCGTCCTCTTTGGCTGTAGCACCTATCAGTCTGGGGATTTGGCTCGGACAGAAAAGGCGGTTGATGGAATTTTTGGGTTTGGCCCCGGTGCTTTATCTGTTATATCACAATTGTCATCAAAAGGCATGACACCCAAAGTGTTCTCTCATTGCTTAAAGGGAGAGGGTAATGGAGGAGGTGTACTGGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATACGCCACTTGTCCCATTACAGCCTCATTACAACTTAAATCTTCAAAGCATTGCTGTCAATGGACAACTTCTCCCAATCGATCAAAATGTATTTGCAACAGCTAACAACCGAGGAACTATAGTTGATTCTGGTACTACATTGGCATACCTTGTTCAAGAAGCTTATGATCCCTTTCTCAATGCTATAACAACCACTGTGTCACAGTTTTCCAAACCCATTATTTCCAAAGGAAATCAGTGCTATCTCGTCCCAACCAGCCTAGGTGATATATTTCCTCAAGTCAGTTTCAATTTCATGGGTGGAGCATCCATGATTTTAAAACCAGAACAGTATCTTATACATTATGGTTTCCTGGACGGTGCTGCAATGTGGTGCATTGGTTTCCAAAAGGTGCAGAAGGGATTCACGATTTTAGGAGATCTTGTCCTGAAGGATAAGATATTCGTATACGACTTAGCTAATCAACGAATTGGGTGGACCGACTATGATTGTTCCTTGTCTGTAAATGTCTCTATGGCTACAAGCAAGAGTAAGGATGCATACATCAATGCAGGACAGATTAGCGTCAGCTCCTCGCACGATGGTTTTCTCCCTAAGTTGCTACTTATAAGCGCTGCGGCTTTTCTTTTGCATATAGTACTTTTCACTGAGCCCCAGATTTTGTAG 1491 0.4447 MRGCVSAWVALAALAVTVTVVYGGFPASFLPLERTIPLNHRVELTTLRARDRARHGRILQDTGILDFSVQGTSDPYLVGLYFTKVKMGSPAKEFSVQIDTGSDILWLNCNTCNNCPQSSGLGIELNFFDTASSSTAALVSCSDPVCSYAVQTATSQCSSQVNQCSYTFQYGDGSGTSGYYVYDAMYFDVIMGQSVFSNSSSTVLFGCSTYQSGDLARTEKAVDGIFGFGPGALSVISQLSSKGMTPKVFSHCLKGEGNGGGVLVLGEILEPNIVYTPLVPLQPHYNLNLQSIAVNGQLLPIDQNVFATANNRGTIVDSGTTLAYLVQEAYDPFLNAITTTVSQFSKPIISKGNQCYLVPTSLGDIFPQVSFNFMGGASMILKPEQYLIHYGFLDGAAMWCIGFQKVQKGFTILGDLVLKDKIFVYDLANQRIGWTDYDCSLSVNVSMATSKSKDAYINAGQISVSSSHDGFLPKLLLISAAAFLLHIVLFTEPQIL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0893 496 PANTHER ASPARTYL PROTEASES 7 458 IPR001461 GO:0004190|GO:0006508
Psa3g0893 496 ProSiteProfiles Peptidase family A1 domain profile. 81 435 IPR033121 -
Psa3g0893 496 CDD pepsin_A_like_plant 81 439 IPR034161 -
Psa3g0893 496 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Psa3g0893 496 Gene3D Acid Proteases 64 267 IPR021109 -
Psa3g0893 496 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 458 - -
Psa3g0893 496 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Psa3g0893 496 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Psa3g0893 496 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Psa3g0893 496 SUPERFAMILY Acid proteases 76 442 IPR021109 -
Psa3g0893 496 Pfam Xylanase inhibitor C-terminal 284 435 IPR032799 -
Psa3g0893 496 Gene3D Acid Proteases 268 446 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0893 Psa-Chr3 84241663 84245878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0893 76 440 Miscellaneous Gene Families AT1G44130 27.649 6.54e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0893 - - gmx:100804147 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0893 3 84241663 84245878 Psa3g0893 3 84241663 84245878 ECH