Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0881 ATGGATGCACCTCGTAAACACCAGGTATCGTTGCGAGGAGCGAGTGCGAAGGAGATTACGCGAGATGATCTTCTTCAGAAGGTTTCGCGGGAAAGAGAACTTCGTAATTATGCAAAACGTGCTGCTGCTGCTGCTCTCTTCGTTCAGAGAGTATGGAGGCGCTTCAAGGTTACAAAGATGGTGGCTCTGCAGCTTCAGCAGGAGTGGGAGACATCGGTGAATAGTTATACTGGGGTGATGACTGCAAATTGGATTTCAAACAATTTGTTGAGGCCATTTCTGTTCTTTGTGACCCGGTTCTCAAATTGGCATCAAAAGGTTCATAGCAAGAAAATAGATTCTATGAGGATGTGCTTTACAATCTTATTGAAAAGCCTGAATTCTTCTGATTCAAAGCTGAACTATTGCTTTTTGGCGATTGGTACTACTGAAGAGAGAATAATTTGGCGTTACCAGGCACAGAGACTTACTTCTCTTGGTTTTTCGATTCTTTCAGAGTATAGTGAATGCAATTCAGGGGCTCAAGATATCACTATTGTTACATCTCTAGCAATGCGTATTCTTGTTATGCTAACTGATCTAAAAGGATGGGAAGGCATTCCAGATGACAACTGCTTAGATGCAGACTTAGCCGTGAAAGGCTTAGTTGAGTTCACAGGGAGTAGTAAAAGTGGCAGTTATGTTTCTATTGCCAGATATATTAGTGCATTGGATAATTACTCTTCCCAGATGAAAGTTGTCACCCAGGCTGCTGAGAAGTTTTTTATTACTGCAAGTGCAATAACTTTAGCTGTGCGGCCCTTTTCTCTGACAAACATTGATGGAGAAAGGCCTTGTATGCTGAATGGCAACCATGCTGCTAAGCAGTATATTTTACATTTAATGACTATTCCTTGGCTAGTGCAACATATCCCACCTGTTCTTCTGCCTGCTTTAAAACACAAATCGATTATGTTCACATGTTTTCAGGCACTATTGATTTTGAAAGAGGATGTTTTAATGGAGATGTCAGAGTTGGTTAAGTCAGAAGTTCTCGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGTCTCTTGCGAACTTTATATGTCTAGCAACAGGGAAGGAAAATAATCATGTAGACTCCGGATCCTTCAATCAAGGTTTAGACTGTGCATTGTATGTCCATGTTATTGTCACTCTAACAGAAAGCCTACTGGCTTGTCTTGATAATATTGAATGGCTCAAAAAGAAGAAATCTCTCCAAACTGATGCCGAAAGTTCAACCCACGAGTCGTTAATAACGTCATACATGGATCAATTTAGGCCTGTCTGTCAGCAATGGCATCTCACAAATCTTTTGGCATCAGTGAATGGAGATGCCACCAACAAGGCTGAGACTTTGATCTCAAACAGTCTGGAATATTTGGGGAAGCTAGATCTGTGTGATGTTGCACTTTTTTATTCTAACTTACTTAGAGTATTTTCAACCTTGAGTCCAATTCGTGGATCTTTACCAGTTCTTAACATGCTATCATTTACTCCTGGATTTCTTGTGAGACTGTGGGGTGAACTTGAGGATTCCTTTTTCTCTGAACACAAACATATGTCGGATAATCACTCAAGTGAAAATGGAAACCATAAAGCTTTTGAGAAGATCCCAAAACAGGCAAGTAAAGATGGGGCCAGTAAGTGGGTCAGCGTACTTCATAAGTTTACAGGTAAGTCACAAACCGCAACAGACTGCACAGATCCCGTTGGCAGTCACTCTGCACCTAGCAAAGTGAATTTAGAACCGTCAGATGTATGGGACATAGAACCTATGAGGCAGGGCCCACAAGGCATTCCAAAAAGTATGTTTGCTATGCTTCATCTTTTCTGTGCAACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTTTATGAGAAACAGGTTCCATTCAAGTTAGAGCAGCAAAGGAGAATTGCATCAATGCTTAATACCCTAGTCTATAATGGCCTGTCTCATGTTAATGGTCATCATAATAGGCCCCTCACAGATTGTGCTGTCAGATGCTTACATTTAATGTATGAAAGGGATTGCAGACATCCATTTTGTCCTCCTGACTTGTGGCTTTCTCCTGCTAGAAAAAGTCGGCCACCAGTTGCAGTTGCTGCTAGAACTCATGAAATTATTTCAACCAACCTGAGATCTGATGATTCATCATCTTCCCTGAGTCTAGGTTCTGTTATCACTGTGACTCCCCATGTTTTCCCATTTGAAGAAAGAGTGGAGATGTTTCGTGAATTCATCAAGATAGATAAAGCCTCACGCAAAATGGCTGGTGAGATTTCTGAACCTGGTTCACGAGCCATTGAGATTGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCAACAATTAAACTCACTTGGGTCAAAGTTGAAGTCATCCATCCATGTCTCATTTGTCAGTGAATGTGGCCTTATGGAGGCAGGTCTTGACTATGGTGGATTATCGAAAGAGTTTTTGACTGACATATCAAAAGAAGCATTTGCCCCTGAATATGGGCTTTTTTCCCAAACCTCAACTTCAGATAGCCTCCTAATTCCCACTGCTTCTGCAAGATTTTTGGACAACGGTCTTCAGATGATTGAGTTCCTTGGAAGAATAGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCTTTCTCGCATGTTTTTGTACAAAAGCTGTTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAGTCTTATGTATGTCAAGAATTATGATGGTGATGTCAAGGAGCTCTTTTTTGACTTCACAGTTACTGAAGAATCATTTGGCAAAAGGCATGTGGTTGAGCTCAAGTCTGGGGGCAAAGATATTTCTGTGACAAATGAAAACAAGATGCAGTACATACATGCGATGGCAGACTACAAACTCAACCAACAGATATTTCCATTTTCAAATGCATTTTATAGAGGGCTAACGGATCTTATATCACCATCCTGGTTGAAATTATTCAACGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTACGATATTGACGTTGATGATTTTAAAAATAATACACGATACACCGGTGGTTACAGTGAGGGGAGCCGGACAATCAAAATCTTTTGGGAGGTGATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGGTTCTTAAATTTGTCACCAGTTGCTCTCGTGCTCCATTACTAGGGTTTAAACACTTACAGCCACCTTTTACCATCCACAAGGTTGCATGTGATGTGCCTCTTTGGGCAACATTTGGAGGACAAGATGTAGAGCGGCTTCCATCAGCTTCAACCTGCTACAACACCCTTAAGCTTCCAACATACAAACGTCCAGGAACTTTGAGAACAAAACTTCTATATGCTATCAACTCAAATGCCGGATTTGAACTTTCTTGA 3447 0.4085 MDAPRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFVQRVWRRFKVTKMVALQLQQEWETSVNSYTGVMTANWISNNLLRPFLFFVTRFSNWHQKVHSKKIDSMRMCFTILLKSLNSSDSKLNYCFLAIGTTEERIIWRYQAQRLTSLGFSILSEYSECNSGAQDITIVTSLAMRILVMLTDLKGWEGIPDDNCLDADLAVKGLVEFTGSSKSGSYVSIARYISALDNYSSQMKVVTQAAEKFFITASAITLAVRPFSLTNIDGERPCMLNGNHAAKQYILHLMTIPWLVQHIPPVLLPALKHKSIMFTCFQALLILKEDVLMEMSELVKSEVLVSFKAIPPVGWSLANFICLATGKENNHVDSGSFNQGLDCALYVHVIVTLTESLLACLDNIEWLKKKKSLQTDAESSTHESLITSYMDQFRPVCQQWHLTNLLASVNGDATNKAETLISNSLEYLGKLDLCDVALFYSNLLRVFSTLSPIRGSLPVLNMLSFTPGFLVRLWGELEDSFFSEHKHMSDNHSSENGNHKAFEKIPKQASKDGASKWVSVLHKFTGKSQTATDCTDPVGSHSAPSKVNLEPSDVWDIEPMRQGPQGIPKSMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSHVNGHHNRPLTDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPVAVAARTHEIISTNLRSDDSSSSLSLGSVITVTPHVFPFEERVEMFREFIKIDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFQQLNSLGSKLKSSIHVSFVSECGLMEAGLDYGGLSKEFLTDISKEAFAPEYGLFSQTSTSDSLLIPTASARFLDNGLQMIEFLGRIVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRSLMYVKNYDGDVKELFFDFTVTEESFGKRHVVELKSGGKDISVTNENKMQYIHAMADYKLNQQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDVDDFKNNTRYTGGYSEGSRTIKIFWEVIKGFEPKERCMVLKFVTSCSRAPLLGFKHLQPPFTIHKVACDVPLWATFGGQDVERLPSASTCYNTLKLPTYKRPGTLRTKLLYAINSNAGFELS* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0881 1148 Gene3D Hect, E3 ligase catalytic domain 906 985 - -
Psa3g0881 1148 CDD HECTc 780 1146 IPR000569 GO:0004842
Psa3g0881 1148 Pfam HECT-domain (ubiquitin-transferase) 835 1148 IPR000569 GO:0004842
Psa3g0881 1148 Gene3D Hect, E3 ligase catalytic domains 782 1020 - -
Psa3g0881 1148 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1148 IPR044611 GO:0000209|GO:0061630
Psa3g0881 1148 SUPERFAMILY Hect, E3 ligase catalytic domain 780 1141 IPR035983 GO:0004842
Psa3g0881 1148 Gene3D Hect, E3 ligase catalytic domain 1023 1147 - -
Psa3g0881 1148 SMART hect_3 798 1148 IPR000569 GO:0004842
Psa3g0881 1148 ProSiteProfiles HECT domain profile. 804 1148 IPR000569 GO:0004842
Psa3g0881 1148 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0881 Psa-Chr3 82635938 82647610 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0881 K10588 - gmx:100527169 1919.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0881 3 82635938 82647610 Psa3g0881 3 82635938 82647610 ECH