Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0880 ATGTCATTTTATTTGAAATGTGGGTTTTATCAAACTGCTTTCAAGGTGTTTGATGAAATGGGCCAGAGGGATATTGGGTCTTGGAACATTGTAATTTCTTGTGCTGTTAAGGGATTTATGTATGACAATGCATTTCAGTTGTTTCTTGATATGCTGGTAACTGATTCTTTTAAAGTTGATTATTTTACGCTGTCGACGGTTTTGGCTGCTTGTGCTAGAACAACTGGTTTGGTGATGGAGGGGAAACAAGTGCATGCGATTGCTGTTAAGGTTGGGTTGGAGACTGAACTGAATGTTGGGAATGCTCTTATTGGGTTTTATACGAATTGTGGAACTCTTGATGGTGTTGTTTGTTTATTTGAGAGGATGGGTGTTAGAGATGTTATAACTTGGATCGAGATGGTGAGGGCCTATATGGAGTTTGGTTTTGTGGATCTGGCTTTGGAATTTTTTGAAGAAATGCCAGAAAAGAATTGTATGACTTATGATGCTCTTTTGTCTGGGTTTTGTCGAAATGGCGAGGGTTTAAAGGGTATAGAATTGTTTGTTAGAATGGTGGATGAGGGCATGGAGTTAACGGATTTCTCTTTGACTAGTGGGATTAATGCTTGTAGTTTGCTTGCTGATTATGGTGTCAGCAAGCAGATGCATGGATTTGCAATCAAGTTTGGGTTTGGATCAAATGTTTGTGTTGAAGGGGCTTTGCTTGACATGTACACAAGGTGTGGGAGGATGGTAGATGCTGAGAAGATGTTTAGCATGTGGGAAGAATTGGAAAAAGTAAGCTCTGTTGTTTGGACTTCCATGATGTGTGGTTATGCTCGAAATGGGCAACCGAATGAGGCAATTTCTTTTTTCCATCTTGGTCATTCTAAAGGGGAATTGATTATGGATGAAGTTGCACTATCTTCGATGCTTGGTCTTTGTGGAACAGTTGGCTATCATGATATGGGCAAGCAAATCCATTGTCAAGTTATTAAATTTGGCTTTCTTTCTAAAGTGCGAGTTGGAAATGCTATTGTTAGTATGTATTTTAAATGTGGGAATGTAGATGATGCAATTAAGATGTTCAGTGGCATGTCCTCTACTGATATAGTTTCATGGAATATTTTAATTTCTGGGTATGTTATGCACAGGCAGGGCGATAGAGCATTGGAAATATGGTGGAAAATGCAGGAAGAGGGCATAACGCCCGATGAAGTTACGTTCATTTTGATAATTTCAGCCTATAGGCAGACTAACTTGAATTTGGTTGATGACTGCCGTAGTTTGTTTGATTCAATGAGAACTATTTATCACATTGAGCCAACATCTCAACATTATTCATCCTTCATCAGTGTTTTGGGTCACTGGGGTCTATTGGAAGAGGCGCTGCAAACTATCAATAAGATGCCTTTTAAGCCTTCTACTTTTGTTTGGCGCGCTTTGCTCGATGGTTGCAAACTCCATAAGAATACAATGATTGAGAAATGGGCTTTCAAGAATATTCTTGCCCTAGAACCTAAAGATCCATCTACTTATATACTTGTTTCAAATTTGTATTCATCTTCTGGGAGATGGGATTGCTCTGAGATGACTAGGGAAAATATGAGAGAAAAGGGATTTCACAAATACCCGGCTCAAAGTTGGATAATTTGTCAGAAGAAAATGCATTCTTTCTATGCAAGAGATAGATCTCATCCGCAAAACAAAGACATATATAGTGGGTTGGAGATTCTAATCTTTGAGTGCCTAAAACTTGGATATGAACCTGACACGCGATTTGTTCTCCACGAAGTGGAGGAGCACCAAAAGAAAAAATTTCTATTCTCTCACAGTTCAAAACTAGCAGCAACTTATGGAATACTGATGACAAAGCCAGGGGAGCCCATCCGGATTGTAAAGAACATCCTTCTTTGCGGGGACTGCCATACATTCTTGAAATATGTATCTATTGTCACTAAGAGGGACATTTTTCTAAGAGATTCTTCAGGATTTCACTGTTTCTCTAATGGCCAATGCTCGTGTAAAGACCAATGTTGA 2022 0.3912 MSFYLKCGFYQTAFKVFDEMGQRDIGSWNIVISCAVKGFMYDNAFQLFLDMLVTDSFKVDYFTLSTVLAACARTTGLVMEGKQVHAIAVKVGLETELNVGNALIGFYTNCGTLDGVVCLFERMGVRDVITWIEMVRAYMEFGFVDLALEFFEEMPEKNCMTYDALLSGFCRNGEGLKGIELFVRMVDEGMELTDFSLTSGINACSLLADYGVSKQMHGFAIKFGFGSNVCVEGALLDMYTRCGRMVDAEKMFSMWEELEKVSSVVWTSMMCGYARNGQPNEAISFFHLGHSKGELIMDEVALSSMLGLCGTVGYHDMGKQIHCQVIKFGFLSKVRVGNAIVSMYFKCGNVDDAIKMFSGMSSTDIVSWNILISGYVMHRQGDRALEIWWKMQEEGITPDEVTFILIISAYRQTNLNLVDDCRSLFDSMRTIYHIEPTSQHYSSFISVLGHWGLLEEALQTINKMPFKPSTFVWRALLDGCKLHKNTMIEKWAFKNILALEPKDPSTYILVSNLYSSSGRWDCSEMTRENMREKGFHKYPAQSWIICQKKMHSFYARDRSHPQNKDIYSGLEILIFECLKLGYEPDTRFVLHEVEEHQKKKFLFSHSSKLAATYGILMTKPGEPIRIVKNILLCGDCHTFLKYVSIVTKRDIFLRDSSGFHCFSNGQCSCKDQC* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0880 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Psa3g0880 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Psa3g0880 673 Gene3D Tetratricopeptide repeat domain 79 217 IPR011990 GO:0005515
Psa3g0880 673 Gene3D Tetratricopeptide repeat domain 290 415 IPR011990 GO:0005515
Psa3g0880 673 Gene3D Tetratricopeptide repeat domain 416 563 IPR011990 GO:0005515
Psa3g0880 673 Pfam E motif 483 544 IPR046848 -
Psa3g0880 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 157 IPR002885 -
Psa3g0880 673 TIGRFAM PPR: pentatricopeptide repeat domain 366 400 IPR002885 -
Psa3g0880 673 TIGRFAM PPR: pentatricopeptide repeat domain 338 366 IPR002885 -
Psa3g0880 673 TIGRFAM PPR: pentatricopeptide repeat domain 161 193 IPR002885 -
Psa3g0880 673 TIGRFAM PPR: pentatricopeptide repeat domain 264 288 IPR002885 -
Psa3g0880 673 Pfam DYW family of nucleic acid deaminases 581 672 IPR032867 GO:0008270
Psa3g0880 673 PANTHER OS07G0172600 PROTEIN 270 659 - -
Psa3g0880 673 PANTHER OS07G0172600 PROTEIN 24 205 - -
Psa3g0880 673 PANTHER OS07G0172600 PROTEIN 194 282 - -
Psa3g0880 673 Pfam PPR repeat 130 159 IPR002885 -
Psa3g0880 673 Pfam PPR repeat 441 464 IPR002885 -
Psa3g0880 673 Pfam PPR repeat 338 361 IPR002885 -
Psa3g0880 673 Pfam PPR repeat 27 52 IPR002885 -
Psa3g0880 673 Pfam PPR repeat 2 24 IPR002885 -
Psa3g0880 673 Pfam PPR repeat 234 257 IPR002885 -
Psa3g0880 673 Pfam PPR repeat 161 189 IPR002885 -
Psa3g0880 673 Pfam PPR repeat 264 288 IPR002885 -
Psa3g0880 673 Pfam PPR repeat family 364 410 IPR002885 -
Psa3g0880 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 270 659 - -
Psa3g0880 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 194 282 - -
Psa3g0880 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 205 - -
Psa3g0880 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Psa3g0880 673 Gene3D Tetratricopeptide repeat domain 1 78 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0880 Psa-Chr3 82620960 82623634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0880 10 671 Glycoside Hydrolase AT3G49170 34.828 6.63e-134 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0880 - - mtr:MTR_7g103230 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0880 3 82620960 82623634 Psa3g0880 3 82620960 82623634 ECH