Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0839 ATGTCAACACCTCACCACCTTCGTTTTACAAACATCATTCTCCTTCTGTTCCTCTCCGCAACCTTAACATCTTTGGCAACAACCACTTCCATTCCACAAGAGCTTCTCAAAGGCTTCTCCACAGTTCCACTCTCTACATCAACATCGTTTCAACCCGTTCTAACCGACAGAACCGGAAACTTCTCTCTCGGGTTCCTGCGCCAGAACCAAAACGACCTACAACTAGTCGTCGTTCACACACCTTCCTCCGAACCACTATGGGTCGCCAACCCAACCCAATCCGCATCATGGGCCGACACCACGCGCCTCTTCTTCAACGGCAGCCTAGTTTTATGGGACTCCCAAAGAAGCATCACGTGGTCGACAAACACTGACGGAGACCGCGTGGTGCTTCTCAACACCTCGAACCTTCAAATTCAAAACAAAGCAACCACCAAAACTCCACTATGGGAAAGTTTCAACTTTCCCACAAACACTCTCGTTCAAGATCAAAACTTCACCACCAACATGACTCTAGTATCGCCTAACCGTCTATACTCTTTACGGTTAGGTGATAATTTCATGGGTTTATACGAAATTAACTCCGAAGAAGAACAAGGAAGGTCGTTATCAAAACGGTTATTTCTGTTATACTGGAAACACACAGCACTACAAGCAAAAGCTAGAGTAGTAACCGGTGCGGGACCCATTTCCGCTAGAGTAAGCACAGAGGGTTATATCGGAATGTATCAAACAAGTTCTAAACCCATTGACGTTCAGAAATTCAACAGCTTCCAACAAACATCATCGACGTCGTTTCTCTTGGTCCGGTTAGAATCCGACGGGAATCTCAAAGGGTATTATTGGGATTCAACAAAGTCCGCCTGGCTATTAAACTATCAAGCTATAACAGAAACCTGCGAGCTTCCGAATCCATGCGGTTCGTATGGTTTGTGTACGCCGGGTGAGTCTAGTTGTTCTTGTTTAGATAACCAAACCCGGTTTGAACCGGGTGGGTGTTTCAATGGCAGTGGTGGTGAAGATGGTGAATTATGCGGTGTGAATGGAATTGGCGGAGAGAAAAATTACATGATTCTGAGAAGGAACGGCGTGGAGCCACCGCATAAGGCGTTACTGGAGGAAGTAACAACGTTATCTTTGGAGGAATGTGAAGGTTTATGCGAGAAAAACTGTAGATGTTGGGGAGCGTTGTATAATAACCAAACCGGGTTTTGTTACGTTCTGGATTATCAAATAGGAACAATGTTGGGTACTGGAGATGAGTCAAAAGTGGGTTATTTTAAGGTGAGGAAAGGTGCACGGAAGAGGAATAGGGTTGGGGTTATAATTGGAATTGTCGTTGCGGTTTTAGTTGGGGTTATTGTTACTGGGGGTGTGATATGTGTGATGAGGTGGAGAAAGAAAAAAGCGAATCCAAAGGAGGAAGATAATTGGGCTTCGCCCGGCCCATATAAGAACCTCGGATCCGAAAGTTTTAGTTCAATTGAAATGTCGGGTAGTGCGCAATAA 1509 0.4526 MSTPHHLRFTNIILLLFLSATLTSLATTTSIPQELLKGFSTVPLSTSTSFQPVLTDRTGNFSLGFLRQNQNDLQLVVVHTPSSEPLWVANPTQSASWADTTRLFFNGSLVLWDSQRSITWSTNTDGDRVVLLNTSNLQIQNKATTKTPLWESFNFPTNTLVQDQNFTTNMTLVSPNRLYSLRLGDNFMGLYEINSEEEQGRSLSKRLFLLYWKHTALQAKARVVTGAGPISARVSTEGYIGMYQTSSKPIDVQKFNSFQQTSSTSFLLVRLESDGNLKGYYWDSTKSAWLLNYQAITETCELPNPCGSYGLCTPGESSCSCLDNQTRFEPGGCFNGSGGEDGELCGVNGIGGEKNYMILRRNGVEPPHKALLEEVTTLSLEECEGLCEKNCRCWGALYNNQTGFCYVLDYQIGTMLGTGDESKVGYFKVRKGARKRNRVGVIIGIVVAVLVGVIVTGGVICVMRWRKKKANPKEEDNWASPGPYKNLGSESFSSIEMSGSAQ* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0839 502 ProSiteProfiles PAN/Apple domain profile. 345 431 IPR003609 -
Psa3g0839 502 PANTHER - 34 490 - -
Psa3g0839 502 Pfam S-locus glycoprotein domain 255 323 IPR000858 GO:0048544
Psa3g0839 502 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 179 IPR036426 -
Psa3g0839 502 PIRSF SLG 4 442 IPR035446 -
Psa3g0839 502 Gene3D - 51 188 - -
Psa3g0839 502 PANTHER OS11G0149900 PROTEIN 34 490 - -
Psa3g0839 502 Pfam PAN domain 373 414 IPR003609 -
Psa3g0839 502 Pfam D-mannose binding lectin 86 180 IPR001480 -
Psa3g0839 502 ProSiteProfiles Bulb-type lectin domain profile. 41 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0839 Psa-Chr3 75598650 75601586 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0839 - - cam:101498584 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0839 3 75598650 75601586 Psa3g0839 3 75598650 75601586 ECH