Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0587 ATGGCGAACACTAAACCTTCATCCGCACTTGATGGAGATGGAGTCGAAGAAGCGAATGGATATCAGAAGTATGAAACAGAGCTTTTTGAGGATACTTTAGTTATTCGCAGTCCCTTCACAGAAACTGAGGTGGAAATGATCAATTTGAATGATACTGAGATTGTAGAGGATTCAGAACCTGTAGAGGATATGACAATTGATGCAAAATGTGAGTATGAGACAGAAGTGGTGCTTGATAGTGAGGACGAAGAAATGAATAATGCAGGCAAAGTGACTGTTGGTGAAAGATTTCTTCAGGATGAAAGTAGTCCAGCAGTTAGCAATTTGTCGGTGCTCTTCAGGAAGAGATTGTCTAAGATACCGTGTGAGCAAGCAAATTCAAAATCAAATGCCATCTCTTCTGGGAAATCTGGTACTGGGGACGAAAGAGCTTCAATTAATGCTGAGAACTTTGATGACAACAACCATCTATATCACTCACCAGAGCCTGAGGATTCAACCCTAGCGGCTTTAGGCTTCGTGGATCAGTACTTGTCATCACTAGATATGGACCTGTTTCAAGGAGTTCAAAATGGAAAGATCACTAGGGAGAAATCACCTCATGTCTCGAGTGCAAGAGGATCATTAAATCTGGCTAAGAAACTTAACGCTCGAACTCAAAATGAAGATAAAGACCCTTTCAAATGGGCTGAAAGTGATCAAACTAAAAAAGAAGCTGCTATTTTCAGTAAAAAAATTGAAGCATCTTTCAATTTTGGAAGCCACGGAATGACATATAAGAGAAGAATACAAAAAAAAGGTAGTCATTCTCAAAACCAAGGTAAATGCGGTGCAAGTAATAGATGTGATGAGAGTTTAGCCCGAGAACCAAGAATAGCAGCTGACAATAATAACTCTCTCAAGGAATTGGATAATGAGTCCTCTTCCCCAAGAGAGAATGTTGATATTTATTCTAACGTAGCACGTACAGAAGACGATTATGATATTGGCTTAGACACTCAAATAGCTGCTGAAGCTATGGATGCATTAGCCAATCTACCCCCTGCTGGCTTTCATTTCAGTGATGCTCACCGATCAGAGAATATGTCTGATGCATCTCTGAGTGATTTGAAACAAGCCCATCAGAAAAATTCTCCATTTAAAGAGAATCCTGGTTCACAGCCTTTTGCACTAAAAACCTACAAGAGAAATGTGTCTGCTTGTAGATTTAGAAAAGTAACTTATAGTTCCTCATTTGAGCACTATAACGATCAGGAGGAGGGGATTATTAGACATAGGAGGAAGGGAAATTGTTTAGCGGCGGCATATCCAGGGAAGATAGATGTTAAGAAAAAACATCTTGATTTGTTTACTAGTACATATGGTGTGGCTAAGAAGAGCAGTATGAACCATCCGGTTGAAGTTAGTCCACAACTATTTGCAACTAACAGTTTTTCAAAGACTGATTCTTGGGCTTATCCAAAAGGACCAAGAGGGAAAAGAAAGCGAGCTAATGCTCCTAGAGTTTTGTGTGTCGATGATAAAGAAAACAATGTCTATTCCACTAGAAGTCTAGAAAACCGCGATGATCTTAAGAAAAAACATATTAATTTATCTTCTTGTTCATATGGTGTGGTTAGAAAGAGCAGTTTGAACCAACAGGTTGACGTTAGTCCACAACATGCAACCAGCAGTTTTTCAAAGATTGATTATTGGACTTATCCAAAAGGATCAAGAGGGAAAAGGAAACGAGCTAATGCCCCAAGTGTCGTGTGTATTGATGATAAAGAAAACAATGTCTATTCCACTAAAAGTCTAGAAGGCCGAGATGATGTGCAAAAATCTTGTCTTCCACCAGTTTCAGCTGGTGATGCTATAAAATTTGAAAACCTGCATGATATGCATCCCTTGTTGCTGGCACATGTTGAAGTATCATCAAACAAGTGTGTTGTACAGTTGAGTTCAGAAGTTTCAGCTTCAGTTGCTCCAAGTGAAGGCATACAAATTTCCAATGCTAACTGCAATGAGCATCACAAAAAGGCATGTGAGAAAAACCGGCCAAAGTCTTCACTTTTGAAGGAACTTGTCAGATTAGGAGTTCCCAAATCTACGTCAGAAATTATGAGCAAAGATCCGAGACCTCGAAAAGATATGACAAATGTTCGAGTTCTATTTAGCCAACATTTGGATGACACTGTCCTCAAGCAACAACAGAAGATCTTGGCGCGTCTTAATATATCTACTGCGTCAAGCTCAATGGAAGCCACTCATTTCATAGCAGACAAGTTCACACGTACAAAGAATATGCTAGAAACAATGGCTCTTGGGAACTTAGTATTGACACACTTATGGCTTGAGAGTTGTGGACAAGCCAACTGTTTTATTGATGAGAACAATTATATTTTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTTAGCATGCCAGTTTCTCTTGCTCGAGCAAGACAAAAGCCACTCTTGAAGGATAAACGAGTCTACATAACACCACACATCAAGCCTAATAAGGAGGTGGTTGCGAGCTTGGTTGCAGCTGTTCAAGGCCAGCTAGTGGATCAAAATCAAATAGTTGCAGACAAGAATGATAATATCTTAGATGATCTATTGATTCTTTCTTGTGAAGAAGACTTTGCAATATGCCGCCATTTCCTTGAGAGAGGAGCTTCTGTTTACAGTTCGGAGCTTGTTCTGAATGGAATTGTAATTCAGAAATTGGAACTCGACAGGCATAAACTGTTCGTGAATCAAGTTTCAAAGAATAAACTAGATTGA 2772 0.3932 MANTKPSSALDGDGVEEANGYQKYETELFEDTLVIRSPFTETEVEMINLNDTEIVEDSEPVEDMTIDAKCEYETEVVLDSEDEEMNNAGKVTVGERFLQDESSPAVSNLSVLFRKRLSKIPCEQANSKSNAISSGKSGTGDERASINAENFDDNNHLYHSPEPEDSTLAALGFVDQYLSSLDMDLFQGVQNGKITREKSPHVSSARGSLNLAKKLNARTQNEDKDPFKWAESDQTKKEAAIFSKKIEASFNFGSHGMTYKRRIQKKGSHSQNQGKCGASNRCDESLAREPRIAADNNNSLKELDNESSSPRENVDIYSNVARTEDDYDIGLDTQIAAEAMDALANLPPAGFHFSDAHRSENMSDASLSDLKQAHQKNSPFKENPGSQPFALKTYKRNVSACRFRKVTYSSSFEHYNDQEEGIIRHRRKGNCLAAAYPGKIDVKKKHLDLFTSTYGVAKKSSMNHPVEVSPQLFATNSFSKTDSWAYPKGPRGKRKRANAPRVLCVDDKENNVYSTRSLENRDDLKKKHINLSSCSYGVVRKSSLNQQVDVSPQHATSSFSKIDYWTYPKGSRGKRKRANAPSVVCIDDKENNVYSTKSLEGRDDVQKSCLPPVSAGDAIKFENLHDMHPLLLAHVEVSSNKCVVQLSSEVSASVAPSEGIQISNANCNEHHKKACEKNRPKSSLLKELVRLGVPKSTSEIMSKDPRPRKDMTNVRVLFSQHLDDTVLKQQQKILARLNISTASSSMEATHFIADKFTRTKNMLETMALGNLVLTHLWLESCGQANCFIDENNYILRDMKKEKEIGFSMPVSLARARQKPLLKDKRVYITPHIKPNKEVVASLVAAVQGQLVDQNQIVADKNDNILDDLLILSCEEDFAICRHFLERGASVYSSELVLNGIVIQKLELDRHKLFVNQVSKNKLD* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0587 923 SUPERFAMILY BRCT domain 698 811 IPR036420 -
Psa3g0587 923 ProSiteProfiles BRCT domain profile. 706 795 IPR001357 -
Psa3g0587 923 CDD BRCT_MDC1_rpt1 714 788 - -
Psa3g0587 923 MobiDBLite consensus disorder prediction 290 314 - -
Psa3g0587 923 CDD BRCT_PAXIP1_rpt6_like 820 906 - -
Psa3g0587 923 Gene3D BRCT domain 702 818 IPR036420 -
Psa3g0587 923 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 525 918 - -
Psa3g0587 923 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 8 418 - -
Psa3g0587 923 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 416 530 - -
Psa3g0587 923 MobiDBLite consensus disorder prediction 1 22 - -
Psa3g0587 923 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 701 795 IPR001357 -
Psa3g0587 923 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 8 418 - -
Psa3g0587 923 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 416 530 - -
Psa3g0587 923 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 525 918 - -
Psa3g0587 923 MobiDBLite consensus disorder prediction 298 314 - -
Psa3g0587 923 Gene3D BRCT domain 819 920 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0587 Psa-Chr3 53068386 53073522 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0587 - K14972 gmx:102659913 949.118