Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa3g0572 | ATGGCAGAAGGAGAGGAGCGTATTGAGCTTAAGTTCCGCATATATGATGGAACGGATATAGCGCACGATACTTATCCAGCGTCTACTACAACAGTTGGTACACTTAAGCAAAAGCTAATTGCTGAGTGGCCTCAAGGAAAAACCGTTATACCAAAGTCAGTCAATGATGTAAAACTTATACACGCTGGTAAAGTTTTGGAAAACACCAAAACGCTTGCTGATTCCAGAATAACTTTCGGTGACATCCCTGGTGCTATTACCATGCATGTTGTAGTACAGCCTCCTATAGCTAAAAAGAAGACAGAGAAGAAGAAGAAGAAGGAGAACATGCAAAAGACAAACTCATGCTCATGCACTATCCTGTAG | 366 | 0.4153 | MAEGEERIELKFRIYDGTDIAHDTYPASTTTVGTLKQKLIAEWPQGKTVIPKSVNDVKLIHAGKVLENTKTLADSRITFGDIPGAITMHVVVQPPIAKKKTEKKKKKENMQKTNSCSCTIL* | 122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa3g0572 | 121 | Pfam | Ubiquitin-2 like Rad60 SUMO-like | 6 | 119 | IPR039540 | - | |
| Psa3g0572 | 121 | ProSiteProfiles | Ubiquitin domain profile. | 8 | 77 | IPR000626 | GO:0005515 | |
| Psa3g0572 | 121 | PANTHER | MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN | 1 | 121 | - | - | |
| Psa3g0572 | 121 | CDD | Ubl_MUBs_plant | 8 | 95 | - | - | |
| Psa3g0572 | 121 | PIRSF | MUB | 1 | 121 | IPR017000 | - | |
| Psa3g0572 | 121 | Gene3D | - | 1 | 101 | - | - | |
| Psa3g0572 | 121 | SUPERFAMILY | Ubiquitin-like | 4 | 98 | IPR029071 | - | |
| Psa3g0572 | 121 | PANTHER | UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN | 1 | 121 | IPR040015 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa3g0572 | Psa-Chr3 | 51978968 | 51982283 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa3g0572 | - | - | gmx:100818909 | 177.563 |
Event-related genes