Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0537 ATGTCTCCACAATCTCACCATGCTTCCACCGATTCACCGGAGTCTCCCCCCGCCACACCGCCGTCGCTTCTTCAACTCTCCTTTAACCAGGACCACGCCTGCTTCGCTGCCGCCACTGATAACGGCTTTCGCATATATAACTGCGACCCTTTCCGCGAACTTTTTCGCCGGGAATTCGGTGGCGGAGGAATCGGCCATGTGGAGATGCTTTTCCGATGTAACATATTAGCACTTGTCGGCGGTGGGTCTCACCCTCAGTACCCTCCCACCAAAGTCATGATCTGGGATGATCATCAAGGTACGTGCATCGGTGAACTCTCGTTCCGTTCTCCCGTTAGCGGTGTTCGGCTTCGGCGGGATCGGATAATCGTCGTGGTGGAGCAGAAGATATTTGTGTATAATTTCGCTGACTTGAAGCTGTTGCATCAGATTGAAACCATTGCGAACCCTAAGGGGCTTTGTGAAGTTTCGCACTTGACAGATTCTCTTGTTCTCGCTTGCCCTGGTTTGCATAAAGGCCAAATTCGTATTGAGCACTTTTCCCAGAAGAGGACCAAGTTTATTTCTGCTCATGATTCGAGAATAGCTTGCTTCGCTCTCACGCTTGATGGACAGTTTATCGCCACTGCCAGCACCAAGGGTACTCTGATTCGGATTTATGATGCTGAACTCGGCACACTACTTCAAGAGGTAAGAAGAGGTGCAAATGCTGCAGAGATATATAGTTTGGCGTTTTCTTCCACTGCTCAGTGGTTAGCAGTTTCCAGTGACAAGGGTACTGTCCATGTTTTTGGCCTTAAGGTTAATCCCAATGTCCCTGAGAATGAAAACTCCCATGGGTCGTCGAGTTCAGATGCCGCCATTGCCTCACCTAGCTCGTCTCGCTCCTTCATTAAATTTAAAGGAGTGTTGCCCAAGTATTTCAATTCAGAGTGGTCAGTTGCTCGGTTTCACTTACACGAGGGCACTCAGTACACTGTTGCATTTGGTGTCGAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATAAATGCCAATTCGATCCAGCGCAAGGAGGTGAAATGACCCAGCTTGAATTTCACAACATTTTAATGTCAGAAACAGCCTTGTGA 1122 0.4822 MSPQSHHASTDSPESPPATPPSLLQLSFNQDHACFAAATDNGFRIYNCDPFRELFRREFGGGGIGHVEMLFRCNILALVGGGSHPQYPPTKVMIWDDHQGTCIGELSFRSPVSGVRLRRDRIIVVVEQKIFVYNFADLKLLHQIETIANPKGLCEVSHLTDSLVLACPGLHKGQIRIEHFSQKRTKFISAHDSRIACFALTLDGQFIATASTKGTLIRIYDAELGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFGLKVNPNVPENENSHGSSSSDAAIASPSSSRSFIKFKGVLPKYFNSEWSVARFHLHEGTQYTVAFGVEKNTVIILGMDGSFYKCQFDPAQGGEMTQLEFHNILMSETAL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0537 373 Gene3D - 22 347 IPR015943 GO:0005515
Psa3g0537 373 MobiDBLite consensus disorder prediction 1 20 - -
Psa3g0537 373 Pfam WD domain, G-beta repeat 234 264 IPR001680 GO:0005515
Psa3g0537 373 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 1 373 - -
Psa3g0537 373 SUPERFAMILY WD40 repeat-like 15 268 IPR036322 GO:0005515
Psa3g0537 373 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 1 373 - -
Psa3g0537 373 SMART WD40_4 224 265 IPR001680 GO:0005515
Psa3g0537 373 SMART WD40_4 99 134 IPR001680 GO:0005515
Psa3g0537 373 SMART WD40_4 181 221 IPR001680 GO:0005515
Psa3g0537 373 SMART WD40_4 13 47 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0537 Psa-Chr3 49242295 49244049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0537 K22991 - gmx:100781692 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0537 3 49242295 49244049 Psa3g0537 3 49242295 49244049 ECH