Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0536 ATGCACAAAAACTGCATCTTCCCCAACAATTTCACATTCCCTTTCCTCTTCAAGTCTCTTTCCGACACCCGCAGCTTCGTTCAGTCCCAGTGTGTCTACACCCATGTTGTGAAACTCGGTCATGTTAACGATGTTTACGTTAATAACTCTCTTCTTGATGTATACGCTTCGTGTGGTTATGTCGCACTTTGTCAACAACTGTTTGATGAAATGCCTCACAGAGATGTTGTGTCTTGGACTGTTTTGATTATGTGTTATCGCTTTGGTGGGATGTATGATGATGCGTTGCTTGTGTTTGAACAGATGCAGTATGCGGGTGTGGTTCCGAATCGGGTCACGATGGTGAATGCTTTGGCTGCTTGTGCTAGCTTTGGTGCTATTGAAATGGGGATTTGGATACATGATATGGTAAGGAGGAATGGGTGGGAGTTGGATGTGATTTTGGGGACGGCGTTGGTTGATATGTATGTGAAGTGTGGAAGAGTGGAAGATGGGTTGAGAGTTTTTAGTTATATGAAGGAAAAGAATGTGTTTACTTGGAATGCTGTTATTAAAGGGCTAGCTTTGGCTAAGAGTGGTGAGGAGGCTGTTTTGTGGTTTAATAGGATGGAGGTTTATGGAGTTAGAGCAGATGAAGTGACTTTGGTTGCGATTCTTTCGGCGTGCAGTCATTCGGGTTTGGTGGATAAGGGTCGATTGATATTTAGTATGTTGGTCGATGGAAAGTATGGATTTTGTCCTAATGTCAAACATTATGCTTGTATGGTTGATCTCTTGGCACGTGCTGGTCAATTGAAAGAGGCTTTTGAGATCATGAGATGTATGCCTTTTGAGCCGACAAAAGCTATGTGGGGATCGTTGTTGATTGGTTCAAAATCGCAGGGCAACTTTGAGTTCAGCGAGTTTGTAGCTAGGAAACTAGTTGAGATGGAGCCAGATAACACTGCCTATTATGTTCAGCTGTCGAATCTGTATGCAGAGGCAGGAAGATGGAGCGATGTTGAGAGAGTAAGGGGAATGATGAAAGAGAGAGAACTGAACAAGGACTTAGGGTATAGTTCTGTAGAGGTTGAACACCGAAGGTCTGCCAGTGAAGTCTCGGCACCGTAA 1110 0.4378 MHKNCIFPNNFTFPFLFKSLSDTRSFVQSQCVYTHVVKLGHVNDVYVNNSLLDVYASCGYVALCQQLFDEMPHRDVVSWTVLIMCYRFGGMYDDALLVFEQMQYAGVVPNRVTMVNALAACASFGAIEMGIWIHDMVRRNGWELDVILGTALVDMYVKCGRVEDGLRVFSYMKEKNVFTWNAVIKGLALAKSGEEAVLWFNRMEVYGVRADEVTLVAILSACSHSGLVDKGRLIFSMLVDGKYGFCPNVKHYACMVDLLARAGQLKEAFEIMRCMPFEPTKAMWGSLLIGSKSQGNFEFSEFVARKLVEMEPDNTAYYVQLSNLYAEAGRWSDVERVRGMMKERELNKDLGYSSVEVEHRRSASEVSAP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0536 369 PANTHER - 1 362 - -
Psa3g0536 369 Pfam PPR repeat 244 275 IPR002885 -
Psa3g0536 369 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Psa3g0536 369 Pfam PPR repeat 77 107 IPR002885 -
Psa3g0536 369 Pfam PPR repeat 49 75 IPR002885 -
Psa3g0536 369 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Psa3g0536 369 Pfam PPR repeat family 175 223 IPR002885 -
Psa3g0536 369 Gene3D Tetratricopeptide repeat domain 16 127 IPR011990 GO:0005515
Psa3g0536 369 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 362 - -
Psa3g0536 369 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 175 IPR002885 -
Psa3g0536 369 TIGRFAM PPR: pentatricopeptide repeat domain 178 211 IPR002885 -
Psa3g0536 369 TIGRFAM PPR: pentatricopeptide repeat domain 150 176 IPR002885 -
Psa3g0536 369 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Psa3g0536 369 Pfam E motif 296 356 IPR046848 -
Psa3g0536 369 Gene3D Tetratricopeptide repeat domain 128 239 IPR011990 GO:0005515
Psa3g0536 369 Gene3D Tetratricopeptide repeat domain 240 367 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0536 Psa-Chr3 49239361 49240470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0536 8 357 Glycoside Hydrolase AT3G49170 35.955 4.36e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0536 - - lja:Lj0g3v0239469.1 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0536 3 49239361 49240470 Psa3g0536 3 49239361 49240470 ECH