Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0533 ATGGTGGCAATGGCCATGCTTGCAGCGCAACAGTTCCTGTTCTTCTCATCACAATCAAATTCCAGAATCTCAACGACAACAACAAGACCATGTCTTCCCCTTCCTCAATTCACCTCCATTCTACTACGTTCACGCAACTCTAAGATTCAGTTTCCCCTCATTTCATGTTCTTCTTCACAAACCCCAGAAACTCAAACTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTCAACTCTTCTCCAAAGGAAAGGTTAAAGATGCTTTGGCTCAGTTTGAAACAGCGCTTTCTTTGAATCCAAATCCTGTAGAGGCCCAAGCTGCTTTCTATAACAAAGCTTGCTGTCATGCATACAGAGGAGAAGGAAAGAAAGCTGCTGAATGTCTTCGCACTGCTTTAAGAGAATACAGTCTAAAATTTGGCACAATTCTCAACGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCGAGGCTGGGTGGGGAAGATGTCGGCTCCAGTTTTCGAAGAGATTTAAAACTTATCAGTGAAGTTCAAGCACCGTTTCGTGGGATTAGGAGATTCTTTTACGTTGCATTTACAGTTTCTGCAGGAATATCATTGTTGTTTAATGTACCAAGGATATTGCGTGTAATTCAAGGCGGTGACGGTGCTCCTGATCTCTTGGAAACCGCTGGCAATGCTGCCGTTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCCTTTGGGAGAATAAAAAAGAGGAGGAACAGCTTGCGCTAATATCCCGAAATGAGACACTATCAAGGTTGCCTTTGCGCCTGTCAACTAATCGCGTAGTTGAACTCGTGCAGCTAAGGGACATAGTTAGACCGGTTATAATAGCTGGGAAAAAAGAATCGGTGACTTCGGCTTTGCAAAGAGCAGATAGATTTCGCACTGATCTCGTTAGACGCGGTGTTTTGTTAGTTCCTGTCATCTGGGGAGAAGGTACAGAAACCAAAGTTAAAAAGAAAGGTTTTAGCCCTCGACCGAAGGCTGCTAAGGGACTTCCATCCATTGGAGAAGATTTTGAGAAGCGGACACAGTCCGTAACTGCACAATCAAAACTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGTTGTATCGCCAGCCGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTCCAGTTGGCGAAGACGTGTACATAATACTGCGCCTAGACGGGCGAGTTCGACGATCAGGGAAAGGTATACCTGACTGGGAGAAAATTGCGCTGGAGCTGCCGCCGATGGATGCAATTTTAAGCAAACTGGAAAGATGA 1344 0.4472 MVAMAMLAAQQFLFFSSQSNSRISTTTTRPCLPLPQFTSILLRSRNSKIQFPLISCSSSQTPETQTQTAESCVNLGLQLFSKGKVKDALAQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAAECLRTALREYSLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTVSAGISLLFNVPRILRVIQGGDGAPDLLETAGNAAVNIGGIVVFVALFLWENKKEEEQLALISRNETLSRLPLRLSTNRVVELVQLRDIVRPVIIAGKKESVTSALQRADRFRTDLVRRGVLLVPVIWGEGTETKVKKKGFSPRPKAAKGLPSIGEDFEKRTQSVTAQSKLKAEVRFKAEVVSPAEWERWIRDQQKSEGVPVGEDVYIILRLDGRVRRSGKGIPDWEKIALELPPMDAILSKLER* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0533 447 Pfam Tetratricopeptide repeat 69 101 IPR013105 -
Psa3g0533 447 SMART tpr_5 106 139 IPR019734 GO:0005515
Psa3g0533 447 SMART tpr_5 69 102 IPR019734 GO:0005515
Psa3g0533 447 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 15 447 - -
Psa3g0533 447 Gene3D Tetratricopeptide repeat domain 54 155 IPR011990 GO:0005515
Psa3g0533 447 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Psa3g0533 447 SUPERFAMILY TPR-like 64 135 IPR011990 GO:0005515
Psa3g0533 447 Pfam Low psii accumulation1 / Rep27 177 254 IPR021883 -
Psa3g0533 447 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 15 447 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0533 - - gmx:100784188 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0533 3 49195592 49198734 Psa3g0533 3 49195592 49198734 ECH