LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g0468	ATGTCTTCCTCCCGTCGCAACACCAATGGCCGTTCACCTCTCGTCAATCCACAGCGTCAAATCACCGCCTTCTTCACCAAAACCACTTCCCATTCTCCCACTCTCTCCAAAACCAATCCAAAACCAAACCCTAACCCTAACCCTAACCCTACTCCTACACTAACTACGCCTTCACCTCTCAATTCCAAACCACACAAACCTCGTCTCGTTATCGGCGCTTCTCCCACATCAACACCCCCTTCCCATTCTCCCTTCATCGGCAAAAGGATCAAGGTTTATTGGCCTTTAGACAATGCCTGGTACGAAGGTGTTGTTAAATCATTTGACAGCGTTACCTCCAAGCATCGGATTCGTTACGACGATGATGAAGAGGAATGCGTTGATCTTTCCAAGGAGAAGATTGAGTGGCTTCCGGATCCTTCTTCCAAGAAGCTTAAACGTTTGCGCCGTGGTTCTTCTCCTATTAGGAAGATGGTGATTGAGGATAATGGGGATGAAGGAAGTCCCAAAGAGGAAACAGAAGAACTTGATGATGATGATGATGATGATTCGGGAGATGAAGATTGGGGGAAGAATGCTGTACTGGAGGATGCTGGTGATGATGATGAGGAAGCTGATATGGAGCTGGAGGAAGAGAATGATGTTTTAGAGAGTGCTAAAGGAAAGAGTAGCGGCAAGGTTGAGCCCAAAAAGCGGAAACTCGGGGAAGCATTGAAATTGGCGCCTATGAAAAAGAGCAAGAGTGGAAATGAATTTAATAGTGTAGCTGTTAAGCACTCACCATTGGAGCCTGGGAAAATTTTGGAGGTTAAAAAGACATTGGATGTTGCAGACAATGTTGCAACTGATGATGTGGCTGAAAGGTCTGAAAGATTTGCGCTCCGCGAAGCCCAGAAGTTTCGCTTTCTGGGAGAAGACCGCAGGGATGCCAAGCGAAGGCGTCCAGGAGATGAAAATTATGACTCAAGAACTCTTTATTTGTCTCCAGATTTTATGAGGAGTTTGTCAGATGGCCAGAAACAATGGTGGGACTTCAAGTCAAAACACATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTATGAAATGGATGCACATATAGGAACAAAAGAGCTTGACTTGCAATATATGAAGGGAGATCAACCTCACTGTGGATTTCCAGAGAAAAATTTCTCAGTAAATGTAGAGAAGCTAGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTTGAGTTTCGTCGCAAAGAGAACGGCTCTAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTTCAAAAGGCACATTAACGGACGGGGAGTTTATGGCAACACATCCTGAAGCTGCATATTTAATGGCATTGACCGAGTACCATGAGAACCATCCAAATAAAATTTCAGAGCGCACCTACGGTGTTTGTGTAGTTGATGTCGCCACAAGCAGAGTCATTCTCGGGCAGTTCAACGATGACTCAGAGTGCAGTGCCTTGTGCTCTATCTTGTCTGAGATCAGACCAGTTGAAATTGTGAAACCTGCCAAACTACTCAGCCCTGAAACTGAAAGGGTACTGCTGAAACACACCAGAAACCCTCTAGTGAATGAGTTAGTTCCAGTTGTGGAATTCTGGGATGCTGATAAAACTTTGGATCAATTGAAGAGAATTTATGGGCATAGTAGTGATGTTAGTGTTGAAGATGGTGGGTTAGATTGTCTGCCAGCTGTTTTGCTGGAGCTGGTGAAAACGGGTCATGACAACAGCAGTGCACTCTCAGCACTTGGTGGTGCTATCTATTATTTGAAACAGGCTTTTCTAGATGAAAAGTTGCTTAGATTTGCTCAGTTTGAGTTGCTTCCATGTTCTGTTTTCAGTGGTCTTGCTTCAAAACCATACATGATTCTTGATGCAGTGGCCCTAGAGAATCTTGAGATATTTGAGAATAGCAGAAATGGAGGGTCTTCAGGCACACTCTATGCTCAATTAAACCAATGTGTTACGGCATTTGGGAAGAGACTGCTAAAGTCATGGCTTGCAAGACCGTTATGTCATGTGGAGTCAATTAAGGAACGCCAGGAAGCCGTTGCAGGTTTAAAGGGAACGAATCTACCTCATGTGCTAGAATTTCGAAAAGCATTATCAAAGCTACCTGACATGGAGCGGTTGCTTGCACGGGTGTTATCTTCTAGTGATGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATTCAGCAAAGAAACAATTGCAAGAGTTTATTTCAGCTCTGCGTGGTCTTGAACTAATGGCACAAGCTTGCCTGGCACTCGGTGGCATTTTAAATGATGTTGAATCTAAACAACTTAGTCATCTTTTAACACCTGGCAAAGGTCTTCCTGATGTCAGCATGGATCTGAATCATTTCAAAGGTGCTTTTGATTGGGTGGAAGCCAATAGCTCCGGCCGTATAATACCTCATGATGGAGCTGACGTAGAGTATGATTCAGCTTCTAAGGCAGTTAAAGAGATCGAGTCCAGTTTATCAAATCATCTCAATGAACAAAGGGAATTACTTGGATGCCCATCGATCTCTTATGTCACTGTTGGAAAGGACACATACCTATTGGAAGTGCCTGAAAATTTGTCTCAGAATATTCCTCATGATTATGAACTGCGTTCATCCAAGAAAGGCTTCTCTAGGTATTGGACTCCAGATATTAAAATATTTTTGAAAGAGCTCTCCCATGCTGAATCTGAAAGGGAGACCTTATTGAAAAGTACATTTCAGAGACTGATTGGGCGTTTTTGTGAACATCACACTCAGTGGAAGCAGTTGGTGTATGCAACTGCTGAATTGGATGTTTTGATCAATTTAGCCATTGTCAGTGATTACTATGAAGGACCAACATGCAGACCGAGTTTTGCTGGGACATTATGTACAGATGAGGCCCCATACATCAATGCTAAAGGTCTTGGACACCCAGTTCTTAGGAGTGATTCCCTAGGAAAAGGTGCCTTTGTACCTAATGACATAACTATTGGTGGTCCAGATCAGGCCTCCTTTATTCTTCTTACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGGCAAGTTTGCATGGCTGTGATTTTGGCCCAGGTAGGAGCTGATGTCCCTGCAGAAAGTTTTGAATTGTCTTCTGTGGACCGAATTTTTGTTCGGATGGGTGCCAGGGATAATATCATGGCTGGCCAAAGTACATTTTTAACTGAACTTTCAGAAACTGCAACAATGCTGTCATCAGCCACTCGAAACTCATTGGTGGCTCTGGATGAGCTTGGGCGTGGGACCTCAACATCTGATGGACAGGCTATTGCGGAATCAGTATTAGAACATCTTGTCCGAAGGGTGCAGTGTCGTGGATTGTTTTCTACACACTATCATAGATTAGCTATAGATCATCTCAAAGATCCCAAGGTCTGTCTCTCTCACATGGCATGCCAAGTTGGTAGTGGAAATGAAGGTTTGGATGAAGTCACCTTTCTTTACAGGCTGACTCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGATTAGCTGGACTACCTACATCTGTGCTTCAGAAGGCTGCTGCTAAGTCCAGAGAATTTGAGGCCAGTTATGGAAAATACAGAAATGTGACTTCTGAAACAAACTGTTTGAATCAAAGTTGGGTCGATAAGATAATAGGAGTGGTACAAAAACTGAATAATGCTGCTACAAATTTGAGTTGTGAGGAGGCTGTTTCTGATTGTTCCCTAATGAAGCTTCAACATAAAGCAAGAAAGCTTCTACAACAATGTTAA	3849	0.4339	MSSSRRNTNGRSPLVNPQRQITAFFTKTTSHSPTLSKTNPKPNPNPNPNPTPTLTTPSPLNSKPHKPRLVIGASPTSTPPSHSPFIGKRIKVYWPLDNAWYEGVVKSFDSVTSKHRIRYDDDEEECVDLSKEKIEWLPDPSSKKLKRLRRGSSPIRKMVIEDNGDEGSPKEETEELDDDDDDDSGDEDWGKNAVLEDAGDDDEEADMELEEENDVLESAKGKSSGKVEPKKRKLGEALKLAPMKKSKSGNEFNSVAVKHSPLEPGKILEVKKTLDVADNVATDDVAERSERFALREAQKFRFLGEDRRDAKRRRPGDENYDSRTLYLSPDFMRSLSDGQKQWWDFKSKHMDKVLFFKMGKFYELYEMDAHIGTKELDLQYMKGDQPHCGFPEKNFSVNVEKLARKGYRVLVVEQTETPEQLEFRRKENGSKDKVVRREICAVVSKGTLTDGEFMATHPEAAYLMALTEYHENHPNKISERTYGVCVVDVATSRVILGQFNDDSECSALCSILSEIRPVEIVKPAKLLSPETERVLLKHTRNPLVNELVPVVEFWDADKTLDQLKRIYGHSSDVSVEDGGLDCLPAVLLELVKTGHDNSSALSALGGAIYYLKQAFLDEKLLRFAQFELLPCSVFSGLASKPYMILDAVALENLEIFENSRNGGSSGTLYAQLNQCVTAFGKRLLKSWLARPLCHVESIKERQEAVAGLKGTNLPHVLEFRKALSKLPDMERLLARVLSSSDASGRNANKVVLYEDSAKKQLQEFISALRGLELMAQACLALGGILNDVESKQLSHLLTPGKGLPDVSMDLNHFKGAFDWVEANSSGRIIPHDGADVEYDSASKAVKEIESSLSNHLNEQRELLGCPSISYVTVGKDTYLLEVPENLSQNIPHDYELRSSKKGFSRYWTPDIKIFLKELSHAESERETLLKSTFQRLIGRFCEHHTQWKQLVYATAELDVLINLAIVSDYYEGPTCRPSFAGTLCTDEAPYINAKGLGHPVLRSDSLGKGAFVPNDITIGGPDQASFILLTGPNMGGKSTLLRQVCMAVILAQVGADVPAESFELSSVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRRVQCRGLFSTHYHRLAIDHLKDPKVCLSHMACQVGSGNEGLDEVTFLYRLTPGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEASYGKYRNVTSETNCLNQSWVDKIIGVVQKLNNAATNLSCEEAVSDCSLMKLQHKARKLLQQC*	1283

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa3g0468	1282	MobiDBLite	consensus disorder prediction	167	187	-	-
Psa3g0468	1282	Gene3D	DNA repair protein MutS, domain I	294	455	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	MobiDBLite	consensus disorder prediction	214	240	-	-
Psa3g0468	1282	MobiDBLite	consensus disorder prediction	140	245	-	-
Psa3g0468	1282	Gene3D	MutS, connector domain	460	640	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	MobiDBLite	consensus disorder prediction	1	38	-	-
Psa3g0468	1282	Gene3D	-	975	1251	IPR027417	-
Psa3g0468	1282	Pfam	MutS domain III	649	964	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	SMART	mutATP5	1024	1216	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	Gene3D	-	75	135	-	-
Psa3g0468	1282	SMART	TUDOR_7	82	140	IPR002999	-
Psa3g0468	1282	SUPERFAMILY	DNA repair protein MutS, domain I	324	447	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	MobiDBLite	consensus disorder prediction	39	57	-	-
Psa3g0468	1282	SUPERFAMILY	Tudor/PWWP/MBT	84	127	-	-
Psa3g0468	1282	MobiDBLite	consensus disorder prediction	197	213	-	-
Psa3g0468	1282	MobiDBLite	consensus disorder prediction	1	84	-	-
Psa3g0468	1282	Gene3D	-	643	964	-	-
Psa3g0468	1282	Pfam	MutS domain I	339	451	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	PIRSF	Msh6	1	1266	IPR017261	GO:0006298\|GO:0030983
Psa3g0468	1282	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	987	1219	IPR027417	-
Psa3g0468	1282	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	305	1240	-	-
Psa3g0468	1282	Pfam	MutS domain V	1028	1218	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	Pfam	MutS family domain IV	833	924	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	SMART	DNAend	663	1004	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	SUPERFAMILY	DNA repair protein MutS, domain II	457	658	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	Pfam	MutS domain II	462	614	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Psa3g0468	1282	Gene3D	-	809	940	-	-
Psa3g0468	1282	SUPERFAMILY	DNA repair protein MutS, domain III	646	970	IPR036187	-
Psa3g0468	1282	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	305	1240	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g0468	Psa-Chr3	44514000	44521583	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa3g0468	K08737		-	gmx:100811104	1914.81

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa3g0468	3	44514000	44521583	Psa3g0468	3	44514000	44521583	ECH