Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0416 ATGTCAAAACTAAGTGTTCTGATCAACATGCATAGGTTGGAAGGTAAGGTTGCCATAGTGACAGGAGGTGCAAGCGGAATAGGAGAAGATGCAGTGAAGACATTTGTCGAAAACGGAGCATTCGTAGTTATAGCAGACATCAACGACGAATTAGGTCACCAACTCGCAACTTCGATCGGCTTAGACAAAGTGAGTTACCACCACTGTGACGTGAGAGATGAAAAACAAGTTGAACAAACTGTATCTTTCACTTTGGAGAAATATGGAACCCTAGACATCATGTTCAGCAACGCTGGGATTGCAGGTCCTATGTCTAGCATACTAGAATTCGATTTGAATGAATTTGACAACACCATGGCTGTTAACGTTCGAGGTGTGGCTGCAACTATCAAGCATGCTGCACGTGTCATGGTGGATCGAAAAATCCGAGGATCCATTATCTGTACTGCTAGTGTGGCTGGATCTGTTGGCGGATGTAGTGGTCATGATTATTCTACATCCAAACATGGTCTTATAGGACTTGTACGTTCAACATGCAGTGAACTTGGAGCTTATGGGATTAGAGTTAATTCTATTTCACCTTATTTAGTTGTCACACCTCTTGCATGTAGGGCACTTGGTATGGAACTGGGTGAACTTGAAGCTAATGGAAATAATATTGCTAATTTGAAAGGAGTTACATTGAAGGGTAAACATATTGCAGAAGCTGCTTTGTTTCTTGCTTCTGATGAATCGGCTTATATTAGTGGACACAACTTGGTTGTTGACGGTGGCTTCTCAGTCATTAATACTGCTTTTCCTAATATTAAAAAATAG 816 0.4118 MSKLSVLINMHRLEGKVAIVTGGASGIGEDAVKTFVENGAFVVIADINDELGHQLATSIGLDKVSYHHCDVRDEKQVEQTVSFTLEKYGTLDIMFSNAGIAGPMSSILEFDLNEFDNTMAVNVRGVAATIKHAARVMVDRKIRGSIICTASVAGSVGGCSGHDYSTSKHGLIGLVRSTCSELGAYGIRVNSISPYLVVTPLACRALGMELGELEANGNNIANLKGVTLKGKHIAEAALFLASDESAYISGHNLVVDGGFSVINTAFPNIKK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0416 271 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 11 270 - -
Psa3g0416 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 261 IPR036291 -
Psa3g0416 271 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Psa3g0416 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Psa3g0416 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Psa3g0416 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Psa3g0416 271 Gene3D - 5 270 - -
Psa3g0416 271 PRINTS Glucose/ribitol dehydrogenase family signature 17 34 IPR002347 -
Psa3g0416 271 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Psa3g0416 271 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Psa3g0416 271 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Psa3g0416 271 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Psa3g0416 271 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Psa3g0416 271 Pfam Enoyl-(Acyl carrier protein) reductase 22 260 - -
Psa3g0416 271 PANTHER OXIDOREDUCTASE-RELATED 11 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0416 Psa-Chr3 40187717 40189121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0416 4 261 Acyl Lipid Metabolism Gene Families AT3G55290 29.630 2.70e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0416 - - gmx:100798299 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0416 3 40187717 40189121 Psa3g0416 3 40187717 40189121 ECH