Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0390 ATGGCTAATAACCCAACACAACCTAATGTTGGGTTCATCCCTTCAAACCCTGACAAGACTTCAATTACCCCTCCTCCTCCTGGATTTCCTCCACCGTTGTTACATTTACAGAAAGATCAAGGCTCTCTTAATTCCTATGCTGTATCACCTGCCAATGGTGCTGTTGCAACTGGAAGTTCGGTTCCTCACATGAGTACTCCTCCTGGACCACCTGTTTTTACGTCGCCTGTTAGGCCGGCGGCTGTTCCGTTTCGAACATCGCCTGCTTCGCCTCAGCCGCCTGCTGTTTCTTCTGGTTCTTCTTTGCCAACATCATCTCTGCCTCATCACTCGAATGGATCGTTTGACTTGCAGCCCCAGGTTTCTGATAGCATTGGGGATCAGGTTTCACTTGGGGAGCCATCCTTTGTACTTTTTTCAGCTCATAAGGTATTGAAGCAGAAGAAACAGGCTAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTGTCGACAGGACCCCAGGTAATACAGCGTGATCCCCATCGCTGTCAGAGCTGTGGGGCATATGCAAATATATATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGAAAACTGAATGGGAGTGACGGTGAGTACATTGCACATAACAAGGAAGATCTTCACAGATTTCCAGAACTAGCTTCACCAATGGTTGACTTTGTTCAAACTGGGACCAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCACCAGTAGTTCTTGTAATAGATGAATGTTTAGATGAACCTCACTTACACCATCTTCAGAGCTCTTTGCATGCATTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTATACTATATGGCCGTACCGTATCAGTGTACGACTTTTCAGAAGAGTCAGTTGCATCTGCTGACGTGCTTCCCGGGGACAAGTCAGCAAGTCAGGAATCTTTGAAAACTTTGATTTATGGTACCGGTATATATTTGTCACCCATGCATGCTTCACTGGCTGTAGCACATTCCGTGTTTTCATCATTGAGGCCATATAAGTTGAATGTACCAGAAGCATCCAGAGATCGGTGCCTAGGAGCTGCAGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCTGCTGATCTGTCCCGAGGGGTAGTCAAAAGGTCAGGGGGCAATAGTAGAGTTATTGTTTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTCAACCACCCTAATTATCCGTATATGGAAAAGACTGCATTAAAATGGATGGAGAATTTAGGTCGCGAGGCTCATCGACACAATATATTGGTTGATATTTTATGTGCTGGAACGTGCCCAGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAGCATCAGGTGGAGTTTTGGTTCTTCATGATGATTTTGGAGAAGCTTTTGGTGTTAATTTACAAAGGGCATCTGCCAGATCAGCAGGCTCCCATGGACTGTTAGAATTGCGGACATCAGATGATATTCTCATTACACAAGTTGTGGGTCCAGGGGAAGAATCACACGTAGACACCCATGAAACATTTAAAAATGACACCGCTCTTTATATTCAAATGCTAAGTGTTGAAGAGACACAGAGCTTCTCTCTCTCTATGGAAACCAAAGGAGATATCAAAAGTGATTTTGTCTTTTTCCAGTTTGCTATTCAGTATTCAAATGTGTATCAGGCTGATGTTTCAAGGGTTGTTACTGTTAGATTGCCTACAGTAGATAGTGTTTCGGGATATCTCGAGAGTGTTCAGGATGAAGTTGCTGCAGTCCTCATTGCAAAGAGAACTCTGTTGCGAGCGAAAAACCAATCTGTTGCTGTTGAGATGCGGAAAACAATAGATGAAAGAATCAAGGATATTGGTCTAAAATTTGGCACCCAATTACCCAAATCAAAACTCCATTGCTTCCCAAAAGAGCTGTCTCTCTTACCGGAGCTCCTTTTCCATCTCAGGAGAGGGCCACTATTGGGATGTATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACCTGTTTCTAAATGCATCCTTTGATCTATCGCTCAGAATGGTGGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCTTATGATCTTGCTATGCAGTCTGATACTGCTGTTGTACTTGATCATGGCACTGATGTCTTCATTTGGCTGGGTGCTGAACTTGTAGCCGATGAAGGAAAAAGTGCCGCTGCTTTGGCTGCATGCAGGACATTAGCCGAAGAGCTGACCGAATTCCGGTTCCCAGCTCCTCGCATCCTTGCATTCAAGGAGGGTAGCTCGCAGGCTCGATATTTTGTCTCTCGTCTCATACCAGCTCACAAGGATCCACCTTATGAGCAGGAGGCAAGGTTTCCACAACTTAGGACATTAACATCAGAACAGCGAACAAGGCTGAAAAGCAATTTTGTTCACTTTGACGATCCGAGTTTTTGTGAATGGATGCGAAGTTTGAAGGCCGTGCCACCACAACTGAGTTGA 2577 0.4525 MANNPTQPNVGFIPSNPDKTSITPPPPGFPPPLLHLQKDQGSLNSYAVSPANGAVATGSSVPHMSTPPGPPVFTSPVRPAAVPFRTSPASPQPPAVSSGSSLPTSSLPHHSNGSFDLQPQVSDSIGDQVSLGEPSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIAHNKEDLHRFPELASPMVDFVQTGTKRPGFVPVSDSRMSAPVVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDFSEESVASADVLPGDKSASQESLKTLIYGTGIYLSPMHASLAVAHSVFSSLRPYKLNVPEASRDRCLGAAVEVALAIIQGPSADLSRGVVKRSGGNSRVIVCAGGPNTYGPGSVPHSFNHPNYPYMEKTALKWMENLGREAHRHNILVDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETKGDIKSDFVFFQFAIQYSNVYQADVSRVVTVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAKNQSVAVEMRKTIDERIKDIGLKFGTQLPKSKLHCFPKELSLLPELLFHLRRGPLLGCIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELVADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTSEQRTRLKSNFVHFDDPSFCEWMRSLKAVPPQLS* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0390 858 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 711 852 IPR036180 -
Psa3g0390 858 MobiDBLite consensus disorder prediction 91 111 - -
Psa3g0390 858 CDD gelsolin_like 711 802 - -
Psa3g0390 858 Pfam Sec23/Sec24 beta-sandwich domain 505 596 IPR012990 -
Psa3g0390 858 SUPERFAMILY vWA-like 260 492 IPR036465 -
Psa3g0390 858 SUPERFAMILY Helical domain of Sec23/24 609 709 IPR036175 GO:0006886|GO:0006888|GO:0030127
Psa3g0390 858 Gene3D Severin 725 822 IPR029006 -
Psa3g0390 858 SUPERFAMILY beta-sandwich domain of Sec23/24 30 607 - -
Psa3g0390 858 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 48 854 - -
Psa3g0390 858 Gene3D Sec23/Sec24 helical domain 598 717 - -
Psa3g0390 858 MobiDBLite consensus disorder prediction 1 18 - -
Psa3g0390 858 Pfam Sec23/Sec24 trunk domain 261 487 IPR006896 GO:0006886|GO:0006888|GO:0030127
Psa3g0390 858 MobiDBLite consensus disorder prediction 19 33 - -
Psa3g0390 858 CDD trunk_domain 253 496 - -
Psa3g0390 858 Gene3D - 169 232 - -
Psa3g0390 858 Gene3D von Willebrand factor, type A domain 259 504 IPR036465 -
Psa3g0390 858 MobiDBLite consensus disorder prediction 85 111 - -
Psa3g0390 858 Pfam Sec23/Sec24 helical domain 610 706 IPR006900 GO:0006886|GO:0006888|GO:0030127
Psa3g0390 858 SUPERFAMILY Zn-finger domain of Sec23/24 169 241 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Psa3g0390 858 MobiDBLite consensus disorder prediction 1 49 - -
Psa3g0390 858 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 48 854 IPR037364 -
Psa3g0390 858 Pfam Sec23/Sec24 zinc finger 179 217 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0390 - - gmx:100781518 1504.19