Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0389 ATGGCGGGGACCGACGACAAAAAACAACAACAATCCGCCGAGAAAAAGAAAGCCGCCGGCGAAAAAAAGCAATCCGCCGCAAAACACCAACGCCGCCGCAAACAACAGCCTGGTGGAAAGAAGAAGGAAGTGAAGAAAGAGACTGGATTAGGTCTTACCAATCGGAAGGCTGAGAATTTCGGAGAGTGGTATTCTGAGGTTGTTGTTAATGGAGAAATGATTGAGTACTATGATATTTCTGGTTGCTATATTCTTAGACCTTGGTCAATGGCAATTTGGGAGATTTTGCAAGCATTTTTTGATCCAGAAATAAAGAAAATGAAGATCAAGAACTGCTACTTCCCTGTGTTTGTTTCTTCTACTGTTCTTGAAAAGGAGAAGGACCATATTGAGGGTTTTGCTCCAGAGGTTGCTTGGGTGACAAAATCTGGAAAATCTGATTTAGAGATTCCTATTGCTATTCGTCCAACTAGTGAAACTGTTATGTATCCCTACTACTCTAAGTGGATAAGGGGACATCGGGACTTGCCTTTGAAACTTAATCAGTGGTGCAACGTTGTTAGATGGGAGTTCAGCAATCCCACACCATTCATCAGGAGTCGCGAGTTTCTTTGGCAAGAAGGACACACTGCGTTTGCAACAAAGGAGGAAGCAGATACGGAGGTTCTTGAGATTTTGGAATTATATAGGCGTATCTACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCGGGTGGCCTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGCCGTGGCATACAAGGTGCAACTTCTCATTGTTTGGGACAAAATTTTGCTAAAATGTTTGAGATAAACTATGAAAATGAGAAGGGAGAGAGAGCGATGGTCTGGCAGAACTCATGGGCCTACAGTACTCGAACGATTGGGGTGATGGTGATGGTTCATGGTGATGACAAGGGATTGGTGATGCCTCCTAAAGTATCATCAGTTCAAGTCATTGTGATTCCTGTGCCTTACAAAGATGCGGATACTCAAGGAATCCTTGATGCCTGTTCTGCAACTGTGGATGCGTTGTTGGAAGTAGGAATTCGTGCCGAGTCAGATTCTAGAGATAACTATTCTCCTGGATGGAAGTATTCTCAGTGGGAAATGAAAGGTGTTCCTCTAAGGATTGAAATTGGGCCAAAGGACTTAGCAAATAAGCAGGTTCGTGCTGTTCGACGTGATAGTGGAGCTAAGATTGACATTGCTAATGCTGATTTGGTTGAGGAAATTAAAAAGTTACTTGATAATATTCAACAAAATCTGTTTGATGTTGCAAAACAAAAACGAGATGAATGTATTCAGGTCATACATACATGGGAGGAGTTTATAGAAGCTTTGAATCAAAAAAAGATGATCTTAGCTCCTTGGTGTGATGAGAAGGAAGTGGAAGAAGATGTCAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCAAAGACACTCTGTAGCCCCTTTGATCAGCCAGAACTCCCCGAAGGGACCGTGTGCTTTGCGTCAGGCAAGCCTGCAAAGAGGTGGTCATACTGGGGCAGAAGTTACTAG 1602 0.432 MAGTDDKKQQQSAEKKKAAGEKKQSAAKHQRRRKQQPGGKKKEVKKETGLGLTNRKAENFGEWYSEVVVNGEMIEYYDISGCYILRPWSMAIWEILQAFFDPEIKKMKIKNCYFPVFVSSTVLEKEKDHIEGFAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINYENEKGERAMVWQNSWAYSTRTIGVMVMVHGDDKGLVMPPKVSSVQVIVIPVPYKDADTQGILDACSATVDALLEVGIRAESDSRDNYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRAVRRDSGAKIDIANADLVEEIKKLLDNIQQNLFDVAKQKRDECIQVIHTWEEFIEALNQKKMILAPWCDEKEVEEDVKARTKGETGAAKTLCSPFDQPELPEGTVCFASGKPAKRWSYWGRSY* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0389 533 SMART ProRS_C_1_2 460 533 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 92 330 IPR006195 -
Psa3g0389 533 MobiDBLite consensus disorder prediction 1 25 - -
Psa3g0389 533 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 152 318 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa3g0389 533 CDD ProRS_anticodon_zinc 326 533 - -
Psa3g0389 533 Gene3D Bira Bifunctional Protein; Domain 2 53 330 IPR045864 -
Psa3g0389 533 MobiDBLite consensus disorder prediction 1 48 - -
Psa3g0389 533 TIGRFAM proS_fam_I: proline--tRNA ligase 55 533 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 Gene3D - 331 451 IPR036621 -
Psa3g0389 533 Gene3D - 454 533 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 PRINTS Prolyl-tRNA synthetase signature 111 129 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 PRINTS Prolyl-tRNA synthetase signature 152 163 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 PRINTS Prolyl-tRNA synthetase signature 182 190 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 PRINTS Prolyl-tRNA synthetase signature 192 203 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 Pfam Anticodon binding domain 337 433 IPR004154 -
Psa3g0389 533 PANTHER PROLYL-TRNA SYNTHETASE 22 533 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 CDD ProRS_core_arch_euk 59 320 IPR033721 -
Psa3g0389 533 SUPERFAMILY Class II aaRS and biotin synthetases 58 324 IPR045864 -
Psa3g0389 533 Coils Coil 428 448 - -
Psa3g0389 533 Pfam Prolyl-tRNA synthetase, C-terminal 460 533 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 SUPERFAMILY Class II aaRS ABD-related 325 452 - -
Psa3g0389 533 PANTHER PROLINE--TRNA LIGASE, CYTOPLASMIC-LIKE 22 533 - -
Psa3g0389 533 Hamap Proline--tRNA ligase [proS]. 53 533 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Psa3g0389 533 SUPERFAMILY C-terminal domain of ProRS 456 533 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0389 Psa-Chr3 36619889 36624606 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0389 K01881 - gmx:100782067 943.34