Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4136 ATGCGGAGCTCAAGGTTATCAGATTCAATGGATGACGAAGACCTCGCTACAGAGCACAAAGTGCCATCTGGTCTTATAAAAGCGATAAAGTTTGATGTTTTAAGCGGGGAAGATATAGAGAAGATCTCTTCTTTGGAGATAAATGCACCTGGGCAGGTCACTTGTTCTGATTTGGGACTTCCAAATTCGTCTTATGGGTGCACGACGTGTGGTTCAAAAGATAGAAAGTCCTGCGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGAAAAAAATTTGCCCTGCATGTAAATCTATTCGACATGAATTACGGATCAAGCGTGCTAAATCACTCCTTGGAATCAATAATACGCCCAAAGGTTGCAAATATTGTTCTGGAAATGGTATGGGTCGTTATCCTGCGATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATTATTGTTGAAGTAAATGATGTATCTTTAAATAAGAAAAGAAATTTGGGGCGAGGACTGCCTGCTGATTATTGGGATTTTATTCTTGGAGATGCTCAACCAGAAGAAAACCATGTAAATAGGAGGGTTTTATCACCCGTTCAGGTTGAGAATTTATTGAGTGGTGTTGATTCAAACTTCATTGAAAAGTATATACCAAGCATGGATTTGGTTGGTCTCAGTTGCTTCCTGGTGGCACCGAATTGTCATCGTGTCACGGAAGTCCCTCATCGACTTTCTGGGGGATATCCATTGAGTTTTGATAACAGGACCAGAGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAGTTAAGTTCTCGTGTTTTGGATTGCTTGCGGTTTTCCAAGATAAATCCTGATAGAACACCAATTAATATTTTTACTGAGTTGCAACAAAGAAAGGTTGGAGAAAATGCTTGCAATTCTTCTGGCTTAAGATGGATGAAAGATGTAGTTCTTGGAAAACGCAATGACAGTACATTCCGAACTGTGGTTGTTGGTGATCCAGACCTCGAGATAAGTGAAATTGGTATACCCTGTCAAATTGCAGAAGGTTTGCAGGTTTCTGAGTACGTAAATAGACAGAATAAGCAAAATTTGCTTTATTGTTGTGAGCTGCGTTTGCTAGAGAAGGGGCATATAAATGTTCGCAGAAAGGGTAATCCAGTTGTTCTGTATAAAAAAGAAGATTTGCAGATAGGAGACGTAATTTATCGGCCTCTCGTTGATGGGGATAAAGTGTTGATAAATAGACCTCCTTCCATACATCAACATTCTATGATTGCTCTCACAGTTAGGGTTCTTCCAATATCTTCTGTAGTATCTATTAACCCAATCTGTTGTTCACCTCTGCGGGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCTGTTGGTGCTAGAGTGGAGCTTAATGAGTTGGTTGCTTTGGATAGGCAACTGATTAATGGGCAGAGTGGTGCAAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCATATTTGCTGTTGCAAGATGGGGTCCTTTTGAATGTTTACCAAATACAGCAACTTCAAATGCTTTGCAATAGAAAATTAACACCCCCTGCAATTGTAAAGGCTCCTTCAAGTAATACCTCATTTTGGAGTGGCAAGCAATTGGTCAGCATGCTCTTGCCTTCTAATTTTGACTATGCTTTTCCTTCAAATGATGTTTTTGTCAGTGATGGAGAGCTGATATCTTGTTCCGAGGCTTCTGGGTGGTTACGCGATTCAGAGAACAATGTTTTCCAAAGTCTTGTGGAACATTTTCAAGGGGAGACTTTGGACATTTTGCATGGTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACTGGGTTTAGTGTTTCCCTATCAGATTTGTACCTTTCTTCTGATTCCTATGCGCGTGAAAACATGATGGAGGAAATCTCATATGGATTACGAGAAGCAGAACAAGCTTGTGATTTCAACCAGTTATTGGTAAATTATTTTTGTGATTTTCTTTCAGGAAGTCTATCAGATAGTGACAATGTTATGACTGTTGACGAGGATCGTCTGAATTACGAAAGACAAATATCTGCTGCTCTAAGTCAAGCGTCAGTTGATGCTTTTAGACATGTTTTTCGCAATATTCAAAGTTTAGCTGATAAATATGCGTGCAACGAAAATAGTTTCCTTGCTATGATTAAGGCTGGAAGCAAGGGTAATTTACTGAAATTAGTGCAACACTCCATGTGCCTTGGACTGCAACATTCCCTGGTTCGCTTGTCATACAGAATCCCCCGAGAACTGACTTGTGCTGGTTGGAACAATCATAAGGGGCTTCATTCAACAGAAATGTTTTCTGATACCCTTGAACCAGGCCAATCTTACATTGCTCATGCTGTGGTTGAAAGCTCTTTTCTTACTGGGTTGAACCCACTTGAATGTTTTGTTCATTCAGTGACGAATCGTGACAGCTCTTTCAGTGACAATGCAGACCTTCCTGGGACATTGACCCGTAGACTTATGTTCTTCATGCGTGATATGTATGATGGATATGATGGATCCGTGAGAAACTTATATGGGAATCAACTTATTCAGTTTTCTTATGATGCTGAAGAGGATTCATCTTGTGATAGCAATTTTCGAGAGGATATTATAGGTGGTGAACCAGTCGGAGCGCTTTCTGCTTGTGCATTTTCTGAGGCTGCATACAGTGCTTTGAGTCAGCCTATTAGTCTACTTGAAGCATCACCTTTGCTGAATTTAAAAAATGTTCTGGAGTGTGGTTCAAGGAAAAGAGGTGGTGATCAGACCGTGTCTTTATTTTTGTCTGAAAAAATTGGTAAACAGAGAAATGGGTTTGAGTATGCAGCACTGGAAGTTAAGAATTATTTGGAAAGATTGATGTTCTCGAACGTTGTTTCTACTGTCATGATAATATTCACTCCACATTCTTGCAATCTAGAAAAATACAGTCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAAATTTAACAAGAAGAAATGTAGAAGTGCATTCTATCATTGATTCTCTTTACCAGCGATATGACTCCTTCAGAAAAGATTCGAAACTCACTCTTCCCAATATGAAAATATCAAGCAAGAAATGTTGTATAGATTGCATGGCTAAGGAAGGTGGAGAAACCTCTGTTCATAAGGAAAAAGACTGTGACGATTGCATCACCGTCACGCTTGTCGAAGACTCTAAAAATTCTGTACAACTGGATGCTGTTCGGAATGTCATGATACCTTTCCTTCTGCGAACTGCGATAAAAGGATTTTTGGAGATCAAGAAGGTTGACATTCTCTGGAAGGATCTTCCAAAAGTATCAAAATCTTATGGTTCTTCTGGTGAACTATACTTGAGGGTTACCATGTCCACCGAAAATGACAGTGGTGCATTCTGGGGTTCACTGATAAACCATTGTCACAGAATAATGCCATTGATTGACTGGACACGAAGTCATCCTGATAACATTCATCATTTCTGCTCAGCCTTTGGAATCGATGCAGGGTGGCAGCAATATCTCCATAATTTGTCGTCTGCAACATCTGACACTGGCAAGTCAATCCTTCCTAAGCATCTGCGTCTTGTTGCCAATAGTCTTTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCGCGACAAAGAAAACATGCAGCTGTTTCATCACCCTTCGTGCAAGCATGCTTTTCTAATCCCGGCAGTTCCTTTTTAAAGGCTGCAAAGTCTGGAGTCGTAGATAATCTCCAGGGCAGTCTAGATGCATTGGCTTGGGGAAATTGTCTCCCCATGGGGACAGGTGGGCAGTTTGATATCATATACTCAGAGAAGGTACAAGAAATTGATAAGCCTGTAGATGTGTATGGTCTGCTAGAAAGCAGTTTTGACCAGCTAGAACAAGAGACTAATACCCCTCAATCTCACAAATATTCATCCAGAAATTGCAATTCAGAGTTTAGGTATAAAAATGGTGGTTATGCCCCAAAAGAGTCTAAGCAGTGGAAAAGTGTTATAAGAAATAACATTACCGTAAATGATATTCAGAAGCTTACTACTGCATCAAGGGTCATACTGAACAAGTATCCGATTGAGGAGATATTAGGTGAGAGGGACAAGTCAACAATAATGAGGGTTTTGCATTTTCATCCTCGTAAAAATGAGAAGCTTGGCTCTGGACTAGAAGACATAAAGGTTGGATGGCATCCCCAGTTTACAGATAGCCGTTGCTTTTTTATAATACGAACAGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTATTGGTGCTCTTGATATTGTTGATCCTGAAAAGTCAAAGATCCAAAAGAAAAAATGGTCAGGAAATAATGACATGGAAGCTAAAAAATGGTTGGGAAATGATGACATGGGAGCTAAAAAAGGCTATGAAAATCATGACACAGGGCTAAAAAGATGGTCCGAAAGCTATGACCTAAAAACTAAAAAATGGTGGAGAAGTGATGACTTGGAAGACAAAAAATGGTCCAGAAATTATGACATGGAAGCTAACAATTTATTGGGAAATTATGACATGGAAGCTAACAAGTGA 4647 0.3981 MRSSRLSDSMDDEDLATEHKVPSGLIKAIKFDVLSGEDIEKISSLEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILKKICPACKSIRHELRIKRAKSLLGINNTPKGCKYCSGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDVSLNKKRNLGRGLPADYWDFILGDAQPEENHVNRRVLSPVQVENLLSGVDSNFIEKYIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPINIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDSTFRTVVVGDPDLEISEIGIPCQIAEGLQVSEYVNRQNKQNLLYCCELRLLEKGHINVRRKGNPVVLYKKEDLQIGDVIYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGANLLSLSQDSLTAAYLLLQDGVLLNVYQIQQLQMLCNRKLTPPAIVKAPSSNTSFWSGKQLVSMLLPSNFDYAFPSNDVFVSDGELISCSEASGWLRDSENNVFQSLVEHFQGETLDILHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARENMMEEISYGLREAEQACDFNQLLVNYFCDFLSGSLSDSDNVMTVDEDRLNYERQISAALSQASVDAFRHVFRNIQSLADKYACNENSFLAMIKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELTCAGWNNHKGLHSTEMFSDTLEPGQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDGYDGSVRNLYGNQLIQFSYDAEEDSSCDSNFREDIIGGEPVGALSACAFSEAAYSALSQPISLLEASPLLNLKNVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSNVVSTVMIIFTPHSCNLEKYSPWVCHFHLDKENLTRRNVEVHSIIDSLYQRYDSFRKDSKLTLPNMKISSKKCCIDCMAKEGGETSVHKEKDCDDCITVTLVEDSKNSVQLDAVRNVMIPFLLRTAIKGFLEIKKVDILWKDLPKVSKSYGSSGELYLRVTMSTENDSGAFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQQYLHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHAAVSSPFVQACFSNPGSSFLKAAKSGVVDNLQGSLDALAWGNCLPMGTGGQFDIIYSEKVQEIDKPVDVYGLLESSFDQLEQETNTPQSHKYSSRNCNSEFRYKNGGYAPKESKQWKSVIRNNITVNDIQKLTTASRVILNKYPIEEILGERDKSTIMRVLHFHPRKNEKLGSGLEDIKVGWHPQFTDSRCFFIIRTDGTVEDFSYRKCIIGALDIVDPEKSKIQKKKWSGNNDMEAKKWLGNDDMGAKKGYENHDTGLKRWSESYDLKTKKWWRSDDLEDKKWSRNYDMEANNLLGNYDMEANK* 1549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4136 1548 Pfam RNA polymerase Rpb1, domain 4 718 772 IPR007083 GO:0003677|GO:0003899|GO:0006351
Psa2g4136 1548 Pfam RNA polymerase Rpb1, domain 3 497 645 IPR007066 GO:0003677|GO:0003899|GO:0006351
Psa2g4136 1548 Gene3D - 643 824 IPR038120 -
Psa2g4136 1548 Gene3D RNA polymerase II, clamp domain 16 132 IPR044893 -
Psa2g4136 1548 Gene3D RNA polymerase ii 367 419 - -
Psa2g4136 1548 PANTHER DNA-DIRECTED RNA POLYMERASE 14 1377 IPR045867 GO:0003899|GO:0006351
Psa2g4136 1548 Gene3D - 330 500 - -
Psa2g4136 1548 Pfam RNA polymerase Rpb1, domain 2 334 491 IPR000722 GO:0003677|GO:0003899|GO:0006351
Psa2g4136 1548 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 14 1377 - -
Psa2g4136 1548 Pfam Protein of unknown function (DUF3223) 1382 1453 - -
Psa2g4136 1548 Gene3D - 1359 1455 - -
Psa2g4136 1548 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 21 1299 - -
Psa2g4136 1548 Gene3D RNA polymerase Rpb1, domain 3 501 642 IPR042102 -
Psa2g4136 1548 CDD RNAP_IV_RPD1_N 34 870 IPR040403 -
Psa2g4136 1548 SMART rpolaneu7 233 521 IPR006592 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4136 Psa-Chr2 420456215 420473000 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4136 K16250 - gmx:100796185 2196.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4136 2 420456215 420473000 Psa2g4136 2 420456215 420473000 ECH