Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3995 ATGGGTTGCGTAACCTCTAGATTAAGAACATTTCCAGGACGTGATGATCCATTCATTCTTTCATCAGAAACGACTTTTAGTGTCAGTGAAGTTGAAGCATTATTTGAACTTTTTAAGAGCATAAGTAGGTCTGTCATAGATGATGAACTAATAAGCAAGGAAGAATTTCAATTGGCAATTTTCAATAATAGAGCAAAGGAGAATCTTTTTTCAAGTCGGATCTTTGATCTATTTGATGTCAAAGGAAGAGGAGCAATTGACTTTGGTGATTTTGTGAGAGCACTCGATGTCTTTCACCCATATACATCACAAGAAGTCAAGATAGATTTTTCATTCAGACTTTATGATTTAGACAATTCAGGCTTTATAGAGCGTCATGAAGTCAAAGAAATGATAAATGCAATTTTATGTGAATCTGAAATTAAGTTGAGTGATGATATGGTAGAAACAATTATTGAGAAGACTTTCTTGGATGCTGACCCAAACCAAGATGGAAAAATAGACAAATTTGAGTGGGAAAAATTTGTTTCTAAAAACATGTCATTGCTAAAAATCATGACATTGCCCTATCTAACGGACATAACAACAAGCTTTCCTAGTTTTGTATTTAACACAAAGTTGGATGATGATATTGTTCTTTGA 642 0.3333 MGCVTSRLRTFPGRDDPFILSSETTFSVSEVEALFELFKSISRSVIDDELISKEEFQLAIFNNRAKENLFSSRIFDLFDVKGRGAIDFGDFVRALDVFHPYTSQEVKIDFSFRLYDLDNSGFIERHEVKEMINAILCESEIKLSDDMVETIIEKTFLDADPNQDGKIDKFEWEKFVSKNMSLLKIMTLPYLTDITTSFPSFVFNTKLDDDIVL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3995 213 PRINTS Recoverin family signature 74 95 - -
Psa2g3995 213 PRINTS Recoverin family signature 121 139 - -
Psa2g3995 213 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Psa2g3995 213 PANTHER CALCINEURIN B-LIKE PROTEIN 1 211 - -
Psa2g3995 213 SUPERFAMILY EF-hand 20 201 IPR011992 -
Psa2g3995 213 Gene3D - 18 210 - -
Psa2g3995 213 PANTHER CALCINEURIN B 1 211 IPR045198 GO:0005509|GO:0019722|GO:0019900
Psa2g3995 213 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Psa2g3995 213 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Psa2g3995 213 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Psa2g3995 213 CDD EFh 107 177 IPR002048 GO:0005509
Psa2g3995 213 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Psa2g3995 213 SMART efh_1 107 135 IPR002048 GO:0005509
Psa2g3995 213 SMART efh_1 70 98 IPR002048 GO:0005509
Psa2g3995 213 SMART efh_1 151 179 IPR002048 GO:0005509
Psa2g3995 213 Pfam EF-hand domain pair 107 175 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3995 Psa-Chr2 414843221 414847293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3995 1 209 EF-hand Containing Proteins AT4G17615 67.619 6.77e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3995 K06268 - gmx:100779020 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3995 2 414843221 414847293 Psa2g3995 2 414843221 414847293 ECH