Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3986 ATGCTGGAGGATCAGGTTTCGTACCTTTTACAAAGGTACCTTGGCAATTATGTCAGGGGTCTCAACAAAGAAGCTCTCAAAATCAGTGTCTGGAAAGGTGATGTAGAGCTGAAGAATATGCAGCTGAAACCGGAGGCTCTAAATGCTTTAAAGTTGCCAGTGAAGGTTAAAGCAGGTTTTCTTGGATCAGTGAAACTTAAGGTTCCGTGGAGTAGGCTTGGCCAAGATCCTGTTTTAGTATATTTGGATCGCATTTTCTTATTAGCTGAACCTGCAACACAAGTTGAGGGATGTAGTGAAGATGCTGTCCAAGAAGCTAAGAAGAGCCTAATACAGGAGACGGAATTGAAACTGTGGGAGAAGTCACAACAACTACAGTCAGAAATGAATAAGTCATGGCTGGGATCTCTCATCAGCACCATAATTGGAAATTTGAAGCTTTCAATTTCTAATATTCACATCAGATATGAGGACGGTGAGAGCAATCCAGGGCACCCATTTGCAGCTGGTGTTAGTTTGGACAAACTCTCGGCTGTGACAGTTGATGATAGTGGGAAAGAGACTTTTATTACTGGAGGTGCACTAGATCGCATTCAGAAGTGTGTTGAACTTGATCGGCTTGCAGTTTATTTAGATTCAGATATTATTCCATGGCATGTTGACAAAGCATGGGAAGATTTGCTTCCTTCAGAATGGTTTCAGATATTTAATTTTGGAACTAAGATGGGAAACCAGCGATATCTTTGTCGGCGAAACATCATATGTTTCTGCAGCGTAACTGGAAAAGAAAAGTACTCAAAGCTGCATTCGAGTGAAGTTGCTGATAGCAAACAACACATTGCAGACGCGCTGTTGTGA 858 0.4172 MLEDQVSYLLQRYLGNYVRGLNKEALKISVWKGDVELKNMQLKPEALNALKLPVKVKAGFLGSVKLKVPWSRLGQDPVLVYLDRIFLLAEPATQVEGCSEDAVQEAKKSLIQETELKLWEKSQQLQSEMNKSWLGSLISTIIGNLKLSISNIHIRYEDGESNPGHPFAAGVSLDKLSAVTVDDSGKETFITGGALDRIQKCVELDRLAVYLDSDIIPWHVDKAWEDLLPSEWFQIFNFGTKMGNQRYLCRRNIICFCSVTGKEKYSKLHSSEVADSKQHIADALL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3986 285 Pfam N-terminal region of Chorein or VPS13 2 108 IPR026854 -
Psa2g3986 285 PANTHER - 66 283 - -
Psa2g3986 285 Pfam Vacuolar sorting-associated protein 13, N-terminal 133 248 IPR031646 -
Psa2g3986 285 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 66 283 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3986 K19525 - gmx:100780088 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3986 2 414543444 414548638 Psa2g3986 2 414543444 414548638 ECH