Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3743 ATGGTATCCGAATCGGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGTAGCTCCGACCTCAACACCACCACAACCTCCACCGTCCGCCGTCAGTTAGAGAGCGATTTCGGAATCGATTTGTCTGATCGAAAAGCATTCATTAGAGAGCAGGTAGACTCGTTTCTTCAAAGCGTTAACCAACAGCAGGAAGATGAACCAGAAAACGACGCCGTAGTAGAAGATGCGGATAAACCAGAACCAAGCCAAGGTTCTGGTTCAAAGGAAGAAACAGAAGAAGAAGAAGTAGAAGAAGAAGAAGTTGAAGAAGAGGATGATAATGAGAAAGAGGCGAATGAAAAACCTAAGCGAACCAGAAGTGTGAAGAAGGAGAAGAAGAAGAAGAAGAGCACGAAGAGTAAAGAACGATCTAACAAGTCAGGTGATGAGGTAGTAAAGAAAAAAGGTGGCGGCGGTTTTTGTAAAATTTGTAGCCTGTCTCCACAACTTCAGGAATTCGTTGGAGCACCAGAGATGGCTAGGACTGAGGTTGTTAAGCAATTGTGGGCCTATATTAGGGAGAAAAATTTGCAAGACCCAGACAATAGGCGAAATATCAATTGTGATGAACCACTGCGTGCTCTTTTTGGTGTCAATTCCATCAATATGTTCCAAATGAATAAAGTATTGGCAAAGCATATCTGGCCACTGGACTCAGATGATGTTATCCAGGTGAAGTCGGCACCAAAGGAAAAGCAGAAGCGAAAGAGAGAAGATGATGATTCAGATGAGCCGAAAGGAAAGGAAAAACGGCAGAAGGGAGGTTCAGGAAAAGGTTTTCTTGCTCCACTTCAACTATCTGATGCCCTTACGAAGTTCCTTGGAGAAAGTGAATTATCAAGATCTGACGTCATTAAAAGAATGTGGGATTATATAAAAGGAAACAGCCTTCAGGATCCTTCTGACAAGAGGCAAATAATATGTGACGAAAAGTTGAAAGAACTCTTTGGTGTTGACTCCTTCAATGGCTTCACCGTTACAAAACTTTTGGTGCCTCATTTCATAAAGTCATAG 1050 0.4314 MVSESELIGRLREFLRSSDLNTTTTSTVRRQLESDFGIDLSDRKAFIREQVDSFLQSVNQQQEDEPENDAVVEDADKPEPSQGSGSKEETEEEEVEEEEVEEEDDNEKEANEKPKRTRSVKKEKKKKKSTKSKERSNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPDNRRNINCDEPLRALFGVNSINMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKQKRKREDDDSDEPKGKEKRQKGGSGKGFLAPLQLSDALTKFLGESELSRSDVIKRMWDYIKGNSLQDPSDKRQIICDEKLKELFGVDSFNGFTVTKLLVPHFIKS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3743 349 PANTHER SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN 1 348 - -
Psa2g3743 349 Pfam SWIB/MDM2 domain 155 226 IPR003121 -
Psa2g3743 349 Pfam SWIB/MDM2 domain 275 346 IPR003121 -
Psa2g3743 349 MobiDBLite consensus disorder prediction 55 144 - -
Psa2g3743 349 MobiDBLite consensus disorder prediction 118 133 - -
Psa2g3743 349 Gene3D - 1 57 - -
Psa2g3743 349 ProSiteProfiles SWIB/MDM2 domain profile. 151 228 IPR003121 -
Psa2g3743 349 MobiDBLite consensus disorder prediction 73 88 - -
Psa2g3743 349 SMART swib_2 272 348 IPR019835 -
Psa2g3743 349 SMART swib_2 152 231 IPR019835 -
Psa2g3743 349 MobiDBLite consensus disorder prediction 237 267 - -
Psa2g3743 349 Gene3D SWIB/MDM2 domain 266 349 IPR036885 -
Psa2g3743 349 MobiDBLite consensus disorder prediction 237 269 - -
Psa2g3743 349 SUPERFAMILY DEK C-terminal domain 3 56 - -
Psa2g3743 349 Coils Coil 86 113 - -
Psa2g3743 349 Pfam DEK C terminal domain 2 55 IPR014876 -
Psa2g3743 349 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 348 - -
Psa2g3743 349 SUPERFAMILY SWIB/MDM2 domain 149 230 IPR036885 -
Psa2g3743 349 MobiDBLite consensus disorder prediction 89 107 - -
Psa2g3743 349 CDD SWIB-MDM2_like 276 346 - -
Psa2g3743 349 ProSiteProfiles SWIB/MDM2 domain profile. 271 348 IPR003121 -
Psa2g3743 349 Gene3D SWIB/MDM2 domain 146 234 IPR036885 -
Psa2g3743 349 SUPERFAMILY SWIB/MDM2 domain 270 348 IPR036885 -
Psa2g3743 349 CDD SWIB-MDM2_like 156 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3743 Psa-Chr2 398462532 398467682 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Psa2g3743 SWIB 3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3743 K15223 - gmx:100786835 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3743 2 398462532 398467682 Psa2g3743 2 398462532 398467682 ECH