Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3725 ATGACAGGCTCATCAAAAAATGGAAGCTCTCACACTAGAAGATACGGAAAATTAAAAAAAAGCGACGAGGAATTCGACGGTTACAACTCCGAGAATCATCCAAGAAAAAACAGCCCCGTAATCACCATCGACGCTCCCCATTTGGATCCTCTTATGGCAGCTGATAACTCTCCATACGATGCTACTCTCTCGCCATTATCGAAATCACCTTGGTCCTCTCATCTCAACGAAGACGCTTCATCTTCCAGCGAAGAAGCTCTTGTTGGTTCATTAGTCCGCGAGGAAGGTCACATATACTCCCTCGCGGCAACTAAGGATTTATTATACACCGGTTCCGACAGCAAAAACATTCGTGTTTGGAAGAATCAAAAGGAATTCGCAGGGTTTAAATCAAACAGCGGTTTAGTTAAAGCAATTGTTATCGCCGGTGAGAAAATTCTCACCGGTCATCAAGACGGAAGAATCCGTGTTTGGAAAGTCTCCGGGAAGAACGAACGGATTCACAGAAGAATCGCAACATTGCCGACGCTAAGAAATTATATAAAATGTTCGATGAAACCAAGTAACTACGTGGAAGTTAAAAAACATCGTAACATGTTGTGGATTAAACACTATGATGCAATTTCGTGTCTAAGTTTAACGGAAGATCATAACTTAATTTACTCAGCTTCGTGGGATAAAACGTTTAAAGTTTGGCGTTCTTCGAATTACAAATGTTTGGAATCAGTGACGGCTCACGACGACGCTGTTAACGCGCTTGTCGTCGGATTCGACGTTTTGGTTTTCACCGGATCAGCCGACGGTACAGTTAAAATGTGGCGACGCGAAATGCAAGGGAAGGCGACGAAGCATTTTTTTTCACAGACGTTGTTGAAACAAGAATGTGCGGTAACAGCTTTAGCGTTGAATTCGGAAGGGACATTTTTATACGCAGGTTCTTCGGATGGTATGGTTAATTATTGGGTGAGGGAAACAAATTTGGAACACGATGGAGTTTTGAGGGGTCATAAATTGGCGGTTTTATGTTTAACGACGGCTGGGAGTTTGGTATTCAGTGGTTCTGCGGACATGGCGATTTGTGTGTGGAAAAGATCGATGAGTAATGAACATGTATGTATGTCGGTGTTGTCGGGACATAGCGGACCGGTGAAATGTCTCGCCGCCGAGAAGGATCCAGATGCAATGTTGAATGAGAGAAGATGGATTTTGTACAGTGGGAGTTTGGATAAGTCTGTTAAGGTTTGGAAGGTTAATGAGTGTGGGGCTTCTGGACAACAAAATAATCACCCGCAGCTACCTCGTCTTAGTGTTAGCGGCGAGTTTCCTAGAGTGACGTCGTTAAGGAAAATGGGGTCGCGAAGATACTAA 1368 0.4371 MTGSSKNGSSHTRRYGKLKKSDEEFDGYNSENHPRKNSPVITIDAPHLDPLMAADNSPYDATLSPLSKSPWSSHLNEDASSSSEEALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNERIHRRIATLPTLRNYIKCSMKPSNYVEVKKHRNMLWIKHYDAISCLSLTEDHNLIYSASWDKTFKVWRSSNYKCLESVTAHDDAVNALVVGFDVLVFTGSADGTVKMWRREMQGKATKHFFSQTLLKQECAVTALALNSEGTFLYAGSSDGMVNYWVRETNLEHDGVLRGHKLAVLCLTTAGSLVFSGSADMAICVWKRSMSNEHVCMSVLSGHSGPVKCLAAEKDPDAMLNERRWILYSGSLDKSVKVWKVNECGASGQQNNHPQLPRLSVSGEFPRVTSLRKMGSRRY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3725 455 MobiDBLite consensus disorder prediction 1 42 - -
Psa2g3725 455 Gene3D - 202 449 IPR015943 GO:0005515
Psa2g3725 455 PRINTS G protein beta WD-40 repeat signature 146 160 IPR020472 -
Psa2g3725 455 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Psa2g3725 455 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Psa2g3725 455 MobiDBLite consensus disorder prediction 15 31 - -
Psa2g3725 455 CDD WD40 95 416 - -
Psa2g3725 455 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 429 IPR045182 -
Psa2g3725 455 Pfam WD domain, G-beta repeat 372 416 IPR001680 GO:0005515
Psa2g3725 455 Pfam WD domain, G-beta repeat 204 232 IPR001680 GO:0005515
Psa2g3725 455 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Psa2g3725 455 Pfam WD domain, G-beta repeat 95 121 IPR001680 GO:0005515
Psa2g3725 455 Pfam WD domain, G-beta repeat 295 321 IPR001680 GO:0005515
Psa2g3725 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Psa2g3725 455 PANTHER BNAANNG11810D PROTEIN 6 429 - -
Psa2g3725 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 321 IPR001680 GO:0005515
Psa2g3725 455 SMART WD40_4 236 274 IPR001680 GO:0005515
Psa2g3725 455 SMART WD40_4 326 363 IPR001680 GO:0005515
Psa2g3725 455 SMART WD40_4 195 233 IPR001680 GO:0005515
Psa2g3725 455 SMART WD40_4 369 416 IPR001680 GO:0005515
Psa2g3725 455 SMART WD40_4 283 322 IPR001680 GO:0005515
Psa2g3725 455 SMART WD40_4 84 121 IPR001680 GO:0005515
Psa2g3725 455 SMART WD40_4 122 159 IPR001680 GO:0005515
Psa2g3725 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 273 IPR001680 GO:0005515
Psa2g3725 455 Gene3D - 78 201 IPR015943 GO:0005515
Psa2g3725 455 SUPERFAMILY WD40 repeat-like 95 420 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3725 Psa-Chr2 397827450 397829254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3725 201 417 Miscellaneous Gene Families AT5G08390 23.661 1.03e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3725 - - gmx:100778593 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3725 2 397827450 397829254 Psa2g3725 2 397827450 397829254 ECH