Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3717 ATGTACTCCGTTTTGAAACTAAAGCCTGCAAGAGCTGTTTCCAGCGTTGTTTGCGTTGCCTCCATACACACACAAACACAAATAAGCAGAACCATTTCACAAGAGTTGAAGTGCCCTACTCATCAAACCCTTCACTGTCTCATAGACCAATGTTTCTCCCTAAAACAACTCAAACTTATCCATGCACAAATCATTCTCCATGGACTCGCCACCCAAGTTCTCACATTAGGCAAACTAGTCTCCTCTAGTGTTCAATTTGGAGATCTCCCTTACGCACACCACCTGTTTGATCAAATTCCTCAACCCAATAAATTCATGTTTAACCATTTGATAAAGGGTTATTCTAATTCTAATGATCCTGCTATGTCTCTGTTGCTCTATCGTCGAATGGTGAGTGCTGGTGTTTTACCAAACCAGTTCACTATCCCTTTCGTTCTCAAAGCTTGTTCTGCTAAATCGTGTTATTGGGTTGGTGTTTGTGTTCATGCTCAGTCTATTAAGCTTGGAATGGGGTCTCATGTCTGTGTTCAAAATTCAATCTTGACTGTTTATGTTGCTTGTGATTTGATACTGAGTGCAAGGAAAGTGTTTGATGATATTTCTGAAAGGACATTGGTTTCATGGAATTCGATGATTGCTGGGTATTCTAAAATGGGTTGGTCCAAAGAAGTCGTTTTGTTGTTTCGTGAAATGCAACAGGTTGGGTTGGAGCCTGATGTGTTCACCTTGGTTGGCTTGCTTTCTGTTTCATCAAAACATGGTAATTTGGATTTGGGAAGATTTGTGCATCACTATATCATTGTTACCGGAATTAAAATTGATTCGGTTGTCACCAATGCACTTGTAGATATGTATGCCAAGTGTGGACGTTTGAAATACTCTGAAAGTGTATTCGATCAAATGCTTGATAAGGATGTAGTTTCTTGGACATGTATGATTAATGCATATGCCAATCATGGGCTTATTGATTGTGCTTTGAAATTTTTTAACCAGGTGCCTGTGAAAAATGTGGTTTCTTGGAATTCGATAATTTGGTGTCATGTTCAAGAAGGACTTTACGCCGAAGCCTTTAAATTTTTCTACAGGATGTGTGGTTCAGGTGTGTTGCCTAATGATGCTACCCTTGTTGCCATTCTTTCATGCTGCAGTCACATGGGTGATCTAGCATTAGGACAAGAAGCCCACAATTACATTTATGATAATAACGTTACACTGAGTGTGACGCTTTGCAACGCAATAATTGACATGTATGCAAAATGTGGCGCTCTTCAGACTGCCATGGACATCTTCTTTGGGATGCCTGAGAAGAATGTGGTGTCGTGGAACGTTATTATCGGGGCACTTGCTCTGCACGGTTTTGGAAAAGAAGCCATCGAGATGTTTGAGAAGATGTGGGCAAGTGGAGTTTTTCCCGATGAGATTACCTTTACAGGGTTGCTTTCTGCTTGTAGTCACAGTGGTCTTGTGGACATGGGAAAACATTACTTTGACACGATGACTTCGACTTTCGGGATCTATCCTGATGTAGAACATTACGCATGCATGGTTGATCTTTTAGGGCGACGTGGATTCTTAGGAGAAGCAATTTCGTTGATACAAAAGATGCCTATTAAACCAGATGTTGTTGTTTGGAGTGCTTTACTTGGTGCTTGTAGAACCTATGGGAATCTAGCAGTTGGTAAGCAAATCATGAAGCAGTTGTTGGAGTTAGGACGATACGATTCCGGGCTTTACGTGCTTCTGTCAAACATGTATTCAGAATCTCAAAGATGGGATGACATGAAGAAAATTAGGAAAATATTGGATGAAAATGGGATAAAAAAGTGCAGGGCAATTAGCTTTATTGAAAAGACATGTAGGGAATCCATTTAA 1872 0.4033 MYSVLKLKPARAVSSVVCVASIHTQTQISRTISQELKCPTHQTLHCLIDQCFSLKQLKLIHAQIILHGLATQVLTLGKLVSSSVQFGDLPYAHHLFDQIPQPNKFMFNHLIKGYSNSNDPAMSLLLYRRMVSAGVLPNQFTIPFVLKACSAKSCYWVGVCVHAQSIKLGMGSHVCVQNSILTVYVACDLILSARKVFDDISERTLVSWNSMIAGYSKMGWSKEVVLLFREMQQVGLEPDVFTLVGLLSVSSKHGNLDLGRFVHHYIIVTGIKIDSVVTNALVDMYAKCGRLKYSESVFDQMLDKDVVSWTCMINAYANHGLIDCALKFFNQVPVKNVVSWNSIIWCHVQEGLYAEAFKFFYRMCGSGVLPNDATLVAILSCCSHMGDLALGQEAHNYIYDNNVTLSVTLCNAIIDMYAKCGALQTAMDIFFGMPEKNVVSWNVIIGALALHGFGKEAIEMFEKMWASGVFPDEITFTGLLSACSHSGLVDMGKHYFDTMTSTFGIYPDVEHYACMVDLLGRRGFLGEAISLIQKMPIKPDVVVWSALLGACRTYGNLAVGKQIMKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKILDENGIKKCRAISFIEKTCRESI* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3717 623 Pfam PPR repeat 512 535 IPR002885 -
Psa2g3717 623 Pfam PPR repeat 105 135 IPR002885 -
Psa2g3717 623 Pfam PPR repeat 278 305 IPR002885 -
Psa2g3717 623 Pfam PPR repeat 307 333 IPR002885 -
Psa2g3717 623 Gene3D Tetratricopeptide repeat domain 163 259 IPR011990 GO:0005515
Psa2g3717 623 PANTHER OS09G0555400 PROTEIN 49 618 - -
Psa2g3717 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Psa2g3717 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Psa2g3717 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Psa2g3717 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Psa2g3717 623 Pfam E motif 554 616 IPR046848 -
Psa2g3717 623 Gene3D Tetratricopeptide repeat domain 27 158 IPR011990 GO:0005515
Psa2g3717 623 Gene3D Tetratricopeptide repeat domain 411 620 IPR011990 GO:0005515
Psa2g3717 623 Gene3D Tetratricopeptide repeat domain 260 410 IPR011990 GO:0005515
Psa2g3717 623 PANTHER OS07G0578800 PROTEIN-RELATED 49 618 IPR045215 GO:0003723|GO:0009451
Psa2g3717 623 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Psa2g3717 623 TIGRFAM PPR: pentatricopeptide repeat domain 106 138 IPR002885 -
Psa2g3717 623 TIGRFAM PPR: pentatricopeptide repeat domain 474 509 IPR002885 -
Psa2g3717 623 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Psa2g3717 623 TIGRFAM PPR: pentatricopeptide repeat domain 439 473 IPR002885 -
Psa2g3717 623 TIGRFAM PPR: pentatricopeptide repeat domain 278 307 IPR002885 -
Psa2g3717 623 TIGRFAM PPR: pentatricopeptide repeat domain 307 331 IPR002885 -
Psa2g3717 623 Pfam PPR repeat family 335 382 IPR002885 -
Psa2g3717 623 Pfam PPR repeat family 436 484 IPR002885 -
Psa2g3717 623 Pfam PPR repeat family 205 246 IPR002885 -
Psa2g3717 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3717 Psa-Chr2 397391438 397393981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3717 231 620 Glycoside Hydrolase AT3G49170 24.773 1.29e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3717 - - ccaj:109801180 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3717 2 397391438 397393981 Psa2g3717 2 397391438 397393981 ECH