LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g3638	ATGTGGCGCTGCGTCGCTCGTGGACTTCGCGTTCCACAATCTAACAGATCCAATAACTCTCTCGGATCTCACTTTTCTAGATTCTTCTCTAGTGGTGTAAGCTCGTCTTACACTGTTGTAGATCATACTTACGATGCAGTTGTGGTGGGTGCTGGTGGTGCTGGTTTGAGAGCTGCTATTGGACTTTCAGAACATGGATTCAATACTGCTTGTATTACTAAGCTTTTCCCAACTCGTTCGCACACTGTTGCAGCTCAGGGTGGCATTAATGCGGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAAGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCGCCAAAAGCGGTTATTGAACTAGAGAATTACGGATTGCCTTTTTCTCGAACAGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGCCAAAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAGGCTATGAGACACAATACGCAGTTTTTTGTGGAATATTTTGCTTTGGATCTTTTAATGAATAGTGATGGTACTTGCCAAGGAGTGATTGCCTTAAATATGGAGGATGGGACACTACATCGTTTCCAAGCTGCTTCAACAATTTTAGCCACAGGGGGTTATGGTAGGGCGTACTTCTCAGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCTATGGCTGCACGTGCTGGGATCGGGCTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACCGGTATATATGGAGCAGGTTGCCTCATAACAGAAGGCTCCCGTGGAGAAGGTGGAATTCTTAGGAATAGCGAGGGGGAGCGGTTTATGGAACGATATGCTCCCACAGCAAAGGATCTTGCTTCCAGAGATGTTGTTTCACGATCAATGACCATGGAGATTCGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTACACTTAAATCATCTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCAATTCCTGTTTTGCCAACGGTGCATTATAACATGGGTGGCATTCCCACAAATCATCATGGAGAGGTGGTTACCATTAAAGGCGACGATCCAGATGCATTAGTTCCAGGATTGATGGCTGCTGGAGAAGCAGCCTGTGCATCAGTTCATGGAGCCAACAGGCTTGGTGCAAATTCACTTTTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCTGAAATTAATAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGCCAGAAAACTATTGCATGGTTGGACAAATTGAGAAATTCAAATGGTTCTTTACCTACTTCAAAAATTCGGTTGAATATGCAACGAGTCATGCAAAGTAATGCTGCTGTATTCCGCACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGTTTCCATGATGTCAAGGTTGAGGACCGGAGTTTAATATGGAACTCCGACTTGATTGAGACTATTGAATTGGAAAATCTTTTGATAAATGCCTGCATCACAATGCACTCTGCAGAAGCTAGGAAGGAGAGTAGAGGAGCTCATGCCCGCGAGGACTTCACGACAAGAGACGATGAGAAGTGGATGAAACATACTTTAGGATTCTGGGAGAATGAGAAGGTCCGATTGGATTACCGGCCGGTGCATTTGAATACATTGGACGATGAGGTTGAGTCATTCCCTCCTAAAGCTCGTGTGTATTAA	1887	0.4467	MWRCVARGLRVPQSNRSNNSLGSHFSRFFSSGVSSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEINRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFHDVKVEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTTRDDEKWMKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY*	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g3638	628	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	487	628	IPR037099	GO:0016491
	Psa2g3638	628	PIRSF	SDHA_APRA_LASPO	34	617	-	-
	Psa2g3638	628	TIGRFAM	sdhA_forward: succinate dehydrogenase, flavoprotein subunit	42	628	IPR011281	GO:0006099\|GO:0016627\|GO:0050660
	Psa2g3638	628	Pfam	Fumarate reductase flavoprotein C-term	497	628	IPR015939	GO:0016491
	Psa2g3638	628	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	273	391	IPR027477	-
	Psa2g3638	628	ProSitePatterns	Fumarate reductase / succinate dehydrogenase FAD-binding site.	79	88	IPR003952	GO:0016491
	Psa2g3638	628	PANTHER	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	3	628	-	-
	Psa2g3638	628	Pfam	FAD binding domain	45	441	IPR003953	-
	Psa2g3638	628	SUPERFAMILY	FAD/NAD(P)-binding domain	36	464	IPR036188	-
	Psa2g3638	628	TIGRFAM	sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit	45	628	IPR014006	GO:0016627\|GO:0022900\|GO:0050660
	Psa2g3638	628	Gene3D	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	283	386	IPR027477	-
	Psa2g3638	628	Gene3D	succinate dehydrogenase protein domain	579	628	-	-
	Psa2g3638	628	Gene3D	-	45	452	IPR036188	-
	Psa2g3638	628	PANTHER	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	3	628	IPR030664	-
	Psa2g3638	628	Gene3D	-	468	578	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g3638	Psa-Chr2	391771166	391778440	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g3638	K00234		-	gmx:100818379	1185.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa2g3638	2	391771166	391778440	Psa2g3638	2	391771166	391778440	ECH
	Psa2g3638	2	391771166	391778440	Psa4g2154	4	174412325	174417481	PCT