Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3630 ATGGTGCACAGTGCATACGATTGTTTAGAACTAGTTCCCAATTTCAACGGCAAGATCGAAGCAATCGAATCCTACGGTTCCAAATTTCTACTCGGTTGCTCCGATGGATCTCTCCGAATTTACGCGCCGGAAACTGATTCCTCCGATCGTTCTAAACCCTACGTGCTGGAGAAGAACTATGCTGGTTTCGCGAAGAAGCCTGTTGTGGCAATGGAAGTTGTGGAATCGAGAGAGCTGCTTTTATCGCTCTCTGAATCCATCGCATTCCATAGACTCTCGAGTTTGGAAACCATAGCAGTTATCACCAAAGCTAAGGGTGCTAACGTCTTTTGCTGGGATGATCGTAGAGGATTTCTATGTTTCGGGAGGCAAAAGCGCGTTTGCATTTTCAGACACGACGGTGGTAGGGGATTTGTGGAGGTGAAAGAGTTTGGTGTGCCGGATGTAGTGAAGTCCATGAGTTGGTGTGGGGAGAATATATGTTTGGGGTTTAGAAGAGAATATGTGATTTTGAATGCTTCAAACGGTGCTTTGTCTGAGGTTTTTACTTCAGGGAGACTAGCGCCGCCTTTAGTAGTGCCTCTTCCGTCTGGTGAGCTGCTTCTTGGAAAGGAGAACATTGGGGTCTTTGTGGATCAAAATGGGAAACTTATTCCTGAAGGCAGGATTTGTTGGTCTGAGGCACCCTTGGAAGTTGTGATTCAGAAGCCATATGCTATTGCTTTGCTGCCTAGATTTGTGGAGATAAGGTCTCTTCGGCAACCTTATCCGTTGATACAAACTATTGTTCTTCGCAACGTTCGTCATCTTTGCCAAAGCAGTAGCTCCGTGATACTTGCTTTGGATAATTCTGTTCAAGGCCTCTTCCCTGTTCCTCTTGGAGCACAGATTGTCCAACTAACTGCGTCGGGCAATTTTGAAGAGGCCTTGTCATTGTGCAAGCTCCTTCCACCCGAAGATTCAAGTCTTCGTGCTGCAAAGGAGGGATCAATTCATATGAGATATGCCCACTATCTTTTTGATAATGGAAGCTATGAGGAGGCTATGGAACATTTTCTGGCAGCTCAAGTAGATATAACCTATGTGCTTTCTCTTTATCCATCCATTGTCCTTCCAAAGACAACTATTGTTCATGAGCCAGAGAAGTTGGACATTGAAAGGGATGCTTCCTATCTCTCCAGTGTTTCAGATGATATGGAATCCTCACCATCTGACGAGAATGCAGCGCTAGAATCCAAAAAAACAAACCATAATATGCTCATGGCTCTCATAAAATATTTACAGAAGAAGAGAGGTTATTTTATTGAGAAGGCTACTTCAGAGGGAACTGAAGAAGTTGTTTTAGATGCTGTTGGGGATAACTTTGCATCCTACAATAGGTTCAGAAAAGCAAACAAGGGGCGTGGTAATATATCGATTAGTTCTGGAGCTCGGGAGATGGCTTCAATATTAGATACTGCTCTGCTCCAAGCATTGCTTCTTACTGGACAATCTTCAGCAGCATTAGAATTGCTTAGAGGTGTTAATTACTGTGATATGAAAATATGTGAAGAAATACTTCGAAAAGGCAACCTTAATGTTGCTTTATTAGAACTTTACAAGTGCAAGTCATTGCACCGGCAAGCTCTTGAACTTCTTCACAAGTTGGTGGAAGAGTCAAGATCCAGCCAGTCTGAAATTACACAAAGGTTCATGCCTGAGGACATTGTTGAGTATCTCAAGCCGCTATGTGGGACAGACCCCATACTTGTTCTGGAATTCTCAATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTCTTTCTGGAAACATACCAGCAGATATGGTGAACTCATATTTGAAGCAGCACTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCCATATCTGGTAATCTGCAAAATGAAATGGTAAACATCTACCTATCTGAAGTTCTTGAGTGGCATGCTGACTTAGATGCTCAACAAAATTGGGACGAGAAAACTTTTACCCCAACCAGGAAAAAGTTACTGTCAGCTTTAGAAGGTATATCTGAATACAATCCAGGGGCTCTGCTGAAACGTCTTCCTCAAGATGCTTTATACGAAGAGCGGGCATTGTTATTGGGAAAAATGAACCAACATGAACTGGCGTTATCTCTGTATGTTCATAAGCTTCATGTTCCAGAATTGGCATTATCTTATTGTGATCGGGTGTATGAGTCCACGCATCAGCCATCTGTAAAAAGTTCTAGCAACATATACCTATTGCTAATGCAAATCTATTTGAATCCTCGAAAGACCACTGCTAGCTTTGAAATGAGAATTGCCAATCTATTATCCCCGCAAAGTTCATCGATTTCTAGAGCTAGTGCAACATCTGTAAAAAGCAAAGGAGGCAGAGGAACAAAGAAAATTGCTGAAATTGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACGGACAGTAGCAGGAGTGACGATGATATGGATGAAAATGAGGGTGGTTCTACTATCATGCTTGATGAGGTTCTTGATCTGTTGAGCCTCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCCAGAGAGACTAAGTTACAGGATTTGCTATCATTTCTTGGGCCTCTTTTGAGAAAGTCTAGTGAAATGTACCGTAACTGTTCAGTGATCAGGAGCTTGAGACAAAGCGAGAACCTTCAGGTGAAAGATGAACTTTATAGTCAGAGGAAAGGAGTTGTGAAGATAACCAGTGATAGCACGTGTTCTCTGTGCCGAAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCCAATGGGAGTACTCTCGTGCACTTCGTCTGTTTTAAAGATTCTCAAAATATGAAAGCAGTGACCAAAGGATCTCAATTGAGGAAGCGATCAAATTGA 2934 0.426 MVHSAYDCLELVPNFNGKIEAIESYGSKFLLGCSDGSLRIYAPETDSSDRSKPYVLEKNYAGFAKKPVVAMEVVESRELLLSLSESIAFHRLSSLETIAVITKAKGANVFCWDDRRGFLCFGRQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICLGFRREYVILNASNGALSEVFTSGRLAPPLVVPLPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHLCQSSSSVILALDNSVQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHMRYAHYLFDNGSYEEAMEHFLAAQVDITYVLSLYPSIVLPKTTIVHEPEKLDIERDASYLSSVSDDMESSPSDENAALESKKTNHNMLMALIKYLQKKRGYFIEKATSEGTEEVVLDAVGDNFASYNRFRKANKGRGNISISSGAREMASILDTALLQALLLTGQSSAALELLRGVNYCDMKICEEILRKGNLNVALLELYKCKSLHRQALELLHKLVEESRSSQSEITQRFMPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYLSEVLEWHADLDAQQNWDEKTFTPTRKKLLSALEGISEYNPGALLKRLPQDALYEERALLLGKMNQHELALSLYVHKLHVPELALSYCDRVYESTHQPSVKSSSNIYLLLMQIYLNPRKTTASFEMRIANLLSPQSSSISRASATSVKSKGGRGTKKIAEIEGAEDTKVSLSSTDSSRSDDDMDENEGGSTIMLDEVLDLLSLRWDRINGAQALKLLPRETKLQDLLSFLGPLLRKSSEMYRNCSVIRSLRQSENLQVKDELYSQRKGVVKITSDSTCSLCRKKIGTSVFAVYPNGSTLVHFVCFKDSQNMKAVTKGSQLRKRSN* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3630 977 Pfam Vacuolar sorting protein 39 domain 2 850 958 IPR019453 -
Psa2g3630 977 Pfam Region in Clathrin and VPS 612 742 IPR000547 GO:0006886|GO:0016192
Psa2g3630 977 SUPERFAMILY WD40 repeat-like 25 171 IPR036322 GO:0005515
Psa2g3630 977 MobiDBLite consensus disorder prediction 817 840 - -
Psa2g3630 977 Pfam CNH domain 27 272 IPR001180 -
Psa2g3630 977 Pfam Vacuolar sorting protein 39 domain 1 484 592 IPR019452 -
Psa2g3630 977 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 587 774 IPR000547 GO:0006886|GO:0016192
Psa2g3630 977 PANTHER CNH DOMAIN CONTAINING 1 975 IPR032914 GO:0016192
Psa2g3630 977 ProSiteProfiles Citron homology (CNH) domain profile. 16 277 IPR001180 -
Psa2g3630 977 PANTHER VACUOLAR SORTING PROTEIN 39 1 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3630 Psa-Chr2 391556521 391562944 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3630 K20183 - gmx:100805342 1582.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3630 2 391556521 391562944 Psa2g3630 2 391556521 391562944 ECH