Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3579 ATGATGATGAATAATCGTTTTTATCCATCTTTTACAAACATTGGTTCAGCATCATCATGGTTTGAGATATACGCTGCTTTCTCCACTTTCATGATGATTTTTAGAACTGCAATCAATGATCTCATACCCTTAAAACTTCGAAACTTCATCATCTCAAAACTCTCCTCTTTCTTCTCAGGTTATAGACCCAGTAACGAAGTCTCACTTCAAATTGATCAGACTTGGGATGGAAATACCAACAATCTCTACTATGCAGCCAAAGAGTATCTCCCTACTAAAATATCCAACACTTACAAATCCCTCAAAGTTGGAAAAATTTCTGATCATAACAACTTACTCTTAGCTTTTGATGGAAAGCAACGAGTGTTCGATGAATTTGAAGGCATCAAGATTAAATGGATGTGTATTCAAAAACTCGATAACGAGGTTTTTGAAAGTCCTAATTCCGTTAGAGAACTACATGATGGTGAGGGTTATCACGAAACATATCAGTATAATAAGCCTAAAGAATCTGCTGAGAACGGATTCGTGTTAAGTTTCGATGAGAAACATAGAGATAAAGTAATGGAGAAATATATTCCACATGTTTTAAGGACTTATGAAGCTATAAAAGCAGGAAATAGAACTCTCAAGATCCATTCCATGCAAACTGGGGTTTGGAAACACAGTGATTTTAATCATCCTGCTTCCTTTGATTCACTTGCTTTGGATCCTGATCTAAAGAAATCTATAACTGATGATATAGATATGTTCTTGAGGAGGAAGAAGCTTTATCAAAAAGTGGGAAAGCCTTGGAAACGTGGTTACCTATTGTATGGGCCACCAGGAACAGGAAAATCTAGTCTTATTGCTGCTATAGCCAAATACTTGAAATTTGATGTCTATGATATGGATCTTAGTTTGGTGTATTGTAACTCACAGCTCACTACATTAATGAGAGGAACATCTAACAGATCCATCATTGTTATTGAAGACATTGACTGCAACAAAGAGGTGCTTAATCGATCAAACCATGTTAATATGGACATGGGTTCAGACCATTTCTCCGGGGCTCAGGTTCATATGCTACAGGCATATCAGGCAAATCCGGGTAATAAAAAAAGGTTTACCATGTCGGGTCTTCTTAATTGTATGGATGGTTTGTGGTCAAGTTTTGGAGAAGAACGGATTTTGATATTCACTACAAATCATAAAGACAAAGTTGATTCGGCATTGTTGCGTCCTGGTAGAATGGATATGCATATTCACTTGTCATTTCTTAAAACCAAGGCATTCAAAATCTTAGCTTCAAACTATTTGGACATTGAAGAACAACATGGTCCACTCATTCAACAAATTGAAGAGCTATTGGAAAAAGTAGATGTCACCCCTGCAGTAGTGGCAGAACATTTGTTGAGAAATGAGGATGCTAATGTTGCTCTAGAAGGACTGGTTAAATTTCTTCATGAAGTTTGA 1455 0.3663 MMMNNRFYPSFTNIGSASSWFEIYAAFSTFMMIFRTAINDLIPLKLRNFIISKLSSFFSGYRPSNEVSLQIDQTWDGNTNNLYYAAKEYLPTKISNTYKSLKVGKISDHNNLLLAFDGKQRVFDEFEGIKIKWMCIQKLDNEVFESPNSVRELHDGEGYHETYQYNKPKESAENGFVLSFDEKHRDKVMEKYIPHVLRTYEAIKAGNRTLKIHSMQTGVWKHSDFNHPASFDSLALDPDLKKSITDDIDMFLRRKKLYQKVGKPWKRGYLLYGPPGTGKSSLIAAIAKYLKFDVYDMDLSLVYCNSQLTTLMRGTSNRSIIVIEDIDCNKEVLNRSNHVNMDMGSDHFSGAQVHMLQAYQANPGNKKRFTMSGLLNCMDGLWSSFGEERILIFTTNHKDKVDSALLRPGRMDMHIHLSFLKTKAFKILASNYLDIEEQHGPLIQQIEELLEKVDVTPAVVAEHLLRNEDANVALEGLVKFLHEV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3579 484 CDD AAA 254 418 - -
Psa2g3579 484 Pfam Domain associated at C-terminal with AAA 42 135 IPR025753 -
Psa2g3579 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 471 IPR027417 -
Psa2g3579 484 SMART AAA_5 265 421 IPR003593 -
Psa2g3579 484 PANTHER BCS1 AAA-TYPE ATPASE 13 482 - -
Psa2g3579 484 Pfam ATPase family associated with various cellular activities (AAA) 270 417 IPR003959 GO:0005524|GO:0016887
Psa2g3579 484 Gene3D - 221 415 IPR027417 -
Psa2g3579 484 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 13 482 - -
Psa2g3579 484 ProSitePatterns AAA-protein family signature. 389 407 IPR003960 GO:0005524|GO:0016887
Psa2g3579 484 Gene3D - 416 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3579 Psa-Chr2 389334881 389336781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3579 239 417 Miscellaneous Gene Families AT3G47060 27.835 7.29e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3579 - K08900 gmx:100787726 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3579 2 389334881 389336781 Psa2g3579 2 389334881 389336781 ECH