Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3527 ATGGCCGATTCAGGATCCACAATCCCAACGGCGTCAACTAACGGCGACGCAACTCCACCTCCCAAAGTAGCACTGATTACCGGAATCACCGGCCAAGACGGATCATACCTAACGGAATTTCTCCTCAACAAAGGCTACGAAGTTCACGGCTTAATCCGTCGTTCTTCCAATTTCAACACTCAACGAATCGACCACATTTATGTAGATCCACACAACGCTCACAAAGCTCGTATGAAACTTCACTACGCTGATCTCTCTGACGCTTCTTCTCTCCGTCGCTGGCTCGATATAATCCTCCCCGACGAAGTTTACAATCTCGCCGCTCAATCTCATGTTGCTGTTTCTTTCGAGATCCCTGATTACACCGCCGACGTTGTTGCCACCGGTGCTCTCCGTTTACTTGAAGCCGTCCGATCTCACATCGACGCATCTGGTAGATCTCACATTCGGTATTATCAAGCTGGATCTTCTGAAATGTTCGGATCAACTCCACCGCCGCAATCGGAAACAACTCCGTTTCATCCTCGGTCGCCTTACGCCGCGTCTAAAGTCGCTGCGCATTGGTACACTGTTAACTACCGTGAAGCGTATGGAATCTACGCTTGTAACGGAATTCTCTTCAATCATGAATCTCCACGACGAGGAGAGAATTTCGTGACGAGGAAGATTACTCGCGCTGTTGGTAGGATCAAGATCGGGCTTCAGAGTAAGCTTTTTCTTGGAAACCTTCAAGCTTCGAGAGATTGGGGATTTGCTGGCGATTATGTGGAAGCGATGTGGTTGATGCTGCAACAAGAGAAGCCTGATGATTATGTTGTTGCGACGGAAGATTCGCATACGGTTGAAGAGTTTTTGCAAGTTGCTTTTGGTTATGTTGGTTTGAATTGGAAGGATCATGTTGTTATTGATAAGAGGTATTTTCGTCCTACTGAAGTTGATAATCTTAAAGGTGATGCTACAAAATCTAAGAAAGTTCTTGGATGGAAACCTAAGGTTAGTTTCGAAGAGCTTGTTAGAATGATGGTTGATAATGATGTTGAAATGGCTAAGAAGGAGAAAGTGCTTGTGGATGCTGGTTACATTGATGCTCAACAGCAACCTTGA 1104 0.4583 MADSGSTIPTASTNGDATPPPKVALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRIDHIYVDPHNAHKARMKLHYADLSDASSLRRWLDIILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIDASGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKVAAHWYTVNYREAYGIYACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEDSHTVEEFLQVAFGYVGLNWKDHVVIDKRYFRPTEVDNLKGDATKSKKVLGWKPKVSFEELVRMMVDNDVEMAKKEKVLVDAGYIDAQQQP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3527 367 CDD GDP_MD_SDR_e 23 347 - -
Psa2g3527 367 Gene3D - 215 341 - -
Psa2g3527 367 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 22 348 IPR006368 GO:0008446|GO:0019673
Psa2g3527 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 22 347 IPR036291 -
Psa2g3527 367 Hamap GDP-mannose 4,6-dehydratase [gmd]. 22 351 IPR006368 GO:0008446|GO:0019673
Psa2g3527 367 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 14 362 - -
Psa2g3527 367 Gene3D - 25 331 - -
Psa2g3527 367 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 14 362 IPR006368 GO:0008446|GO:0019673
Psa2g3527 367 Pfam GDP-mannose 4,6 dehydratase 25 341 IPR016040 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3527 25 207 Miscellaneous Gene Families AT4G12250 28.796 1.51e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3527 K01711 - gmx:100777692 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3527 2 386005207 386006310 Psa2g3527 2 386005207 386006310 ECH