Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3460 ATGTCTTCCCCAAGAAAGATCACTCTCAAGAGCTCCGACGGCGAAGCTTTCGAGGTTGACGAGGCGGTGGCTTTGGAGTCGCAAACCATCAAGCACATGATCGAAGATGATTGCGCCGATAGCGGAATTCCTCTTCCGAACGTTACGAGCAAGATCCTTGCTAAAGTGATTGAATACTGTAAGAAACACGTTGATGCGGTGAGTTCTGATGAAAAACCCTCTGAAGATGAACTCAAGGCTTGGGATGCAGAGTTCGTCAAGGTTGACCAGGCAACGCTGTTCGATCTCATTCTGGCTGCAAACTATTTGAACATCAAGAGCCTTCTTGATCTCACATGCCAGACTGTAGCGGACATGATCAAGGGAAAGACACCAGAGGAAATCCGCAAAACTTTTAACATTAAGAATGACTTTAGTCCTGAGGAAGAAGAGGAAGTCCGCAGGGAAAACCAATGGGCATTTGAATGA 468 0.4658 MSSPRKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAVSSDEKPSEDELKAWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3460 155 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Psa2g3460 155 SUPERFAMILY Skp1 dimerisation domain-like 78 153 IPR036296 GO:0006511
Psa2g3460 155 SUPERFAMILY POZ domain 5 65 IPR011333 -
Psa2g3460 155 Pfam Skp1 family, dimerisation domain 106 153 IPR016072 GO:0006511
Psa2g3460 155 SMART skp1_3 4 105 IPR001232 GO:0006511
Psa2g3460 155 CDD BTB_POZ_SKP1 6 120 - -
Psa2g3460 155 Gene3D Potassium Channel Kv1.1; Chain A 2 155 IPR011333 -
Psa2g3460 155 Pfam Skp1 family, tetramerisation domain 6 64 IPR016073 GO:0006511
Psa2g3460 155 PANTHER SKP1 1 155 IPR016897 GO:0006511
Psa2g3460 155 PANTHER PUTATIVE-RELATED 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3460 Psa-Chr2 382678250 382680572 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3460 K03094 - gmx:100809769 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3460 2 382678250 382680572 Psa2g3460 2 382678250 382680572 ECH