LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g3333	ATGGATGTTCAGCAACGAAGCCTGAAAGCCGTCGAATGTTCAGCTCCCTCCGACAAATTTTCAAAAACGAAAAACGAAAAGCATGACTCACAACCACAACCTTCACTCTACTTAGCAAACGCGGTTTTCTTCGGCCTCTTCTTCTCTGTCGCATACTTTCTTCTTCACCGGTGGCGTGAGAAAATCCGAACCTCTACTCCTCTACACGTTCTCACAATCTCCGAGATTGTAGCTGTAGTTTCCCTCATCGCTTCAATTTTCTATCTTATGGTTTTCTTCGGCATTAGCTTCATCCTTCATCCGTTCGCCGCGTCTCGTGCCGTTCAGTATGATGAAGAAGACGAAGCAGAGATTGCTACAACCACCGGTTCATGTCTAGCCGAAGTTACACCGAAATTACCGCCGTTACCACCAAAAACCTCAGTCAAAAAAGTTACTCCAGCACCGGCTACGTTGCAGCTTTCCTCGGATGACGAGGAGGTTGTCCGAGCTGTGGTTTCAGGATCAATTCCGTCTTACTCACTTGAATCCAAACTCGGAGATTGCCGGCGTGCGGCGGCGATTCGTAACCAAGTGGTGGAGAGAGTTAGCGGAAGGTCACTTGAGGGCTTACCTATTGAAAATTTTGATTACAATTCTATATTAGGACAGTGTTGCGAGATGCCGATTGGATTTGTTCAGATTCCGGTGGGAGTTGCCGGACCTCTGTTGCTTGACGGAAAAGAGTTCACGGTTCCCATGGCAACCACTGAAGGTTGTTTGGTTGCAAGCACTAACAGAGGCTGTAAAGCTATTTATGTTTCCGGTGGTGCTTCCGCCGTTGTCCTCCGTGACGGCATGACTAGAGCCCCCGTTGTTAGATTCAACTCCGCCAAAAGAGCTTCTCAGTTAAAGTTCTATTTAGAACATCCTCAAAATTTTGATTCTCTGGCTCACACTTTCAACAAGTCAAGTAGATTTGCAAGATTACAGAATATAAAAGCTACTATAGCAGGAAAGAATTTATACATTAGGTTTATGTGTTCAACCGGTGATGCAATGGGGATGAATATGGTATCAAAAGGTGTTCAAAATGTACTTGACTTTCTTCAAACCGATTTTCCAGATATGGATGTGATTGGTATATCTGGAAATTATTGTTCAGACAAGAAAGCAGCAGCAGTGAATTGGATTGAAGGGAGAGGAAAATCTGTGGTGTGCGAAGCTGTAATTAAGGAAGAAGTGGTGAAGAAAGTGTTGAAGACTAGTGTTGAGTCTTTGGTTGAGCTTAACATGCTAAAGAATCTTACTGGTTCAGCCATGGCTGGTGCTCTTGGTGGATTCAATGCGCATGCTAGACAAGATCCTGCTCAGAATGTTGAGAGTTCTCATTGTATGACCATGATGGAAGCTGTGAATAATGGGAAAGACCTTCATGTCTCGGTCACTATGCCTTCCATTGAGGTGGGAACAGTTGGTGGAGGCACACAGCTAGCATCACAATCAGCTTGTTTGAATTTACTTGGTGTGAAGGGTGCTAGTAAGGAGTCACCGGGAGAAAATTCAAGGCAACTGGCAACAATAGTAGCTGGTTCAGTCCTTGCCGGAGAGCTTTCACTCATGTCCGCTATTGCAGCCGGTCAGCTGGTAAAGAGCCACATGAAATACAACAGATCTAGTAAAGATGTCACCAAAATTGCTTCATGA	1686	0.4484	MDVQQRSLKAVECSAPSDKFSKTKNEKHDSQPQPSLYLANAVFFGLFFSVAYFLLHRWREKIRTSTPLHVLTISEIVAVVSLIASIFYLMVFFGISFILHPFAASRAVQYDEEDEAEIATTTGSCLAEVTPKLPPLPPKTSVKKVTPAPATLQLSSDDEEVVRAVVSGSIPSYSLESKLGDCRRAAAIRNQVVERVSGRSLEGLPIENFDYNSILGQCCEMPIGFVQIPVGVAGPLLLDGKEFTVPMATTEGCLVASTNRGCKAIYVSGGASAVVLRDGMTRAPVVRFNSAKRASQLKFYLEHPQNFDSLAHTFNKSSRFARLQNIKATIAGKNLYIRFMCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGISGNYCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVESLVELNMLKNLTGSAMAGALGGFNAHARQDPAQNVESSHCMTMMEAVNNGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGENSRQLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVTKIAS*	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g3333	561	PANTHER	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE	4	561	-	-
	Psa2g3333	561	TIGRFAM	HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH)	158	551	IPR004554	GO:0004420\|GO:0005515\|GO:0008299
	Psa2g3333	561	Gene3D	-	229	538	IPR023074	GO:0004420
	Psa2g3333	561	SUPERFAMILY	NAD-binding domain of HMG-CoA reductase	279	395	IPR009023	-
	Psa2g3333	561	ProSitePatterns	Hydroxymethylglutaryl-coenzyme A reductases signature 3.	536	549	IPR023076	GO:0004420
	Psa2g3333	561	Gene3D	-	279	395	IPR009023	-
	Psa2g3333	561	ProSiteProfiles	Hydroxymethylglutaryl-coenzyme A reductases family profile.	158	551	IPR002202	GO:0004420\|GO:0015936
	Psa2g3333	561	PANTHER	3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE	4	561	IPR002202	GO:0004420\|GO:0015936
	Psa2g3333	561	SUPERFAMILY	Substrate-binding domain of HMG-CoA reductase	153	540	IPR009029	GO:0015936\|GO:0016616
	Psa2g3333	561	ProSitePatterns	Hydroxymethylglutaryl-coenzyme A reductases signature 1.	338	352	IPR023076	GO:0004420
	Psa2g3333	561	ProSitePatterns	Hydroxymethylglutaryl-coenzyme A reductases signature 2.	482	489	IPR023076	GO:0004420
	Psa2g3333	561	Pfam	Hydroxymethylglutaryl-coenzyme A reductase	186	551	IPR002202	GO:0004420\|GO:0015936
	Psa2g3333	561	CDD	HMG-CoA_reductase_classI	159	551	IPR004554	GO:0004420\|GO:0005515\|GO:0008299
	Psa2g3333	561	Gene3D	-	154	228	IPR023282	GO:0004420
	Psa2g3333	561	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	218	239	IPR002202	GO:0004420\|GO:0015936
	Psa2g3333	561	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	245	265	IPR002202	GO:0004420\|GO:0015936
	Psa2g3333	561	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	336	354	IPR002202	GO:0004420\|GO:0015936
	Psa2g3333	561	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	376	401	IPR002202	GO:0004420\|GO:0015936
	Psa2g3333	561	PRINTS	Hydroxymethylglutaryl-coenzyme A reductase signature	427	453	IPR002202	GO:0004420\|GO:0015936

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g3333	29	557	Lipid Metabolism Gene Families	AT1G76490	70.425	0.0	781

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g3333	K00021		-	gmx:100786956	789.26

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa2g3333	2	375231518	375233731	Psa2g3333	2	375231518	375233731	ECH