Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3298 ATGAGAACATGGGTAGTTTTTCATTTGAAGCTAAAGCATGTAACAAGCACCTTTCAAAATTTTCGATCTAGAAAGTCATCTTCATTCCATTCATTTTCTTCACAAAACAACCAAAATAGGATTTTCAGCACTGTTGGGGTTGCTTTTCCTCCATGTGATCCTTCCATGTTGTCACGTTGTTGTCGTCGTTTTTGTAACGCCACTCATCTGTTTGATAAAATGCCACAAAGGGTTCTTCATGTAAGAGAGGTTCATTTTGAGCTTGTTGTTGATTGTATTAAATTATCCCTGAAAAAACCTAACATTGTGACTGCCACTGTTGTGCATTCTGCTGCCTTGAAGATAGGTGCTCTAGCTTACCTTCCAGCTTCAACATCTTTATTCACTCTTTATTCCAAAGCTGGAGACTTTACCTCTTCTAGGGCTTTATTTGAAGACAGTCACATCAGAGATGTTATTTCTTGGAATGCTATTATTTCGGCATCTCTCGAAAACAAATGCTATAAAGCAGCAGTGGAGTTCTTTGAGAAAATGATCAAGGACCAAAATAGGTTTGATTCCACCACTCTATTGCTTATGGTATCAACTTTGTTGCACATGAAAAACTTTGATCAAGGAAAGGCGATTCATTGCGTGAGCATAAAATATGGGATGCTTGTGGATATCAGTTTATGTAATGCTCTTATTAACATGTATGCTAAGTGTGGTGACCTAAACTCTTGTGATTCTGAGTATCTATTTGAAGAGGTGGAATATAAAGATGTTGTTTCCTGGAACTCGATGATGAGAGGATGTCTTTACAACGGCGATCCGGAGAAAACGTTGTGTTATTTCAGAAGGATTTTTTTTTCTGAAGAAACGGCAGACCATGTCAGCCTTTCTTGTGCTATTTCGGCGTGTTCGAGTTTGGGAGAATTGGATTTTGGAGAATGCATTCATGGTCAAGTAATCAAACTGGGATACAAGGATAACTCTCATGTTTCGGTCGCAAACTCTCTCATTTCATTATATTCACAATGTGAGGTCGTTGATGTTGCAGAGACTGTATTCAGAGAAATAGCTTACAAAGATATTGTTTCTTGGAATGCAATGATGGAAGGATATGCTTCAAATGAAAATATTCATGAAGTTTTTGATCTTATGGTTGAAATGCAAACTACAGGATCTTTCCAACCTGATATAGTAACGTTAACTACCATACTTCCACTTTGTGCAGAACTAATGCTCTCCAGAGAAGGAAGAACTATCCATGGATATTCAATTAGAAGACAAATGTTATCTCATCATCTTCCTTTGCGGAACGGTCTTATAGACATGTATTCGAAGTGCAACCTTGTCGAGAAAGCCGAGCTCTTGTTCAATTCTACAAAAGAGAGAGACTTGGTCTCATGGAATGCAATGATATCTGGCTATTCCTTGAACAAATATTCTGAAAAGGCTCAAAATTTGTTCAAAGAACTGCTATGTTGCAGTCCAAACTGCAGCGCGTCGACTGTTTTCTCCATTCTATCTTCCTGCGACTCTCCGAATAGTCTCAACTTTGGAAAATCGGTTCACAGCTGGCAATTAAAATCTGGTTTTTTGAACCACATTCTCTCGGTAAATTTTCTCATGCAAATGTATATCAACTGTGGAGACCTAAGTTCTGGTTTCTCAATTTTGCAAGAGAATTCTTCTATAGCAGATATTGCTTCATGGAACACTATAATTGTAGGTTGTGTAAGAGGTGACCATTTTCAAAAGGCTTTAGAGACTTTCATGTTAATGAGACAAAAACCTCATTTCAACTATGACTCCATAACCCTTGCAAATGTTTTATCTGCCATTGCAAACATGGAACTACTCAACCAAGGAAAGTCTCTCCACAGCCTTGCTGTTAAATCTCCTTTCGGGTCAGATACCCGTGTTCAGAACTCCTTAATTACCATGTATGACAGATGCAGAGACATCAACAGTGCTAGAAAAATGTTCAAATTCCATTCTAGTTCCAATCTATGCACATGGAACTGCATGATCTCAGCTTTATCACATAACAAGAAAAGTAGAGAAGCATTGGAACTATTCCATTGTCTTCCTTTTAAACCGAATGAGTTCACGATCGTTAGTATTCTCTCCGCGTGCACTCAAATTGGTCTTCTAAGATGCGGAAAACAAGTTCATGCCTACATGTTCAGGTATGGATATCAAAAGAATTCTTTCATATCAGCAGCTCTTGTAGATATGTACAGCAACAGTGGAAGACTGGACAATGCTATCCAAGTATTCAGACATTCGACGAAGTCAGAATCAGCTTGGAATTCAATGATTGCTGCATATGGTAATCATGGAAATGGAGAAAAAGCTATCAAACTCTTCCATGAGATGTGTGAGTCAGGAATTAAAGTGACCAAAAGCACATTTGTTAGTCTTTTATCTGCATGCAGCCATTCCGGAATTGTGAGCCAAGGACTTGGGTACTATGAATGTATGTTGGAGAAATACGGCATAAAACCTGAGGCTGAACATCAAGTTTATGTGGTTGACATGTTAGGAAGATCAGGTAGAATTGATGAGGCTTATGAGTTTACAAAAGGGTTACAATGCAATTTAAGTTCAGGTGTATGGGGAATGCTTTTAAGTGTATGCAACTATCATGGAGAAATTAAGTTGGGAAAAAAAGTTGCTGAACATCTCTTTAAATTGGAACCTGAAAATGTTGGATATTATATATCATTGTCAAATATGTATGTTGCAGCAGGAAGCTGGAAAGATGCCACTGAGTTGAGACAATCTATCTATGACCAAGGATTAAGAAAATGTGCAGGCTATAGCCTTATTGATGTTGGTTTGGGATAA 2835 0.3799 MRTWVVFHLKLKHVTSTFQNFRSRKSSSFHSFSSQNNQNRIFSTVGVAFPPCDPSMLSRCCRRFCNATHLFDKMPQRVLHVREVHFELVVDCIKLSLKKPNIVTATVVHSAALKIGALAYLPASTSLFTLYSKAGDFTSSRALFEDSHIRDVISWNAIISASLENKCYKAAVEFFEKMIKDQNRFDSTTLLLMVSTLLHMKNFDQGKAIHCVSIKYGMLVDISLCNALINMYAKCGDLNSCDSEYLFEEVEYKDVVSWNSMMRGCLYNGDPEKTLCYFRRIFFSEETADHVSLSCAISACSSLGELDFGECIHGQVIKLGYKDNSHVSVANSLISLYSQCEVVDVAETVFREIAYKDIVSWNAMMEGYASNENIHEVFDLMVEMQTTGSFQPDIVTLTTILPLCAELMLSREGRTIHGYSIRRQMLSHHLPLRNGLIDMYSKCNLVEKAELLFNSTKERDLVSWNAMISGYSLNKYSEKAQNLFKELLCCSPNCSASTVFSILSSCDSPNSLNFGKSVHSWQLKSGFLNHILSVNFLMQMYINCGDLSSGFSILQENSSIADIASWNTIIVGCVRGDHFQKALETFMLMRQKPHFNYDSITLANVLSAIANMELLNQGKSLHSLAVKSPFGSDTRVQNSLITMYDRCRDINSARKMFKFHSSSNLCTWNCMISALSHNKKSREALELFHCLPFKPNEFTIVSILSACTQIGLLRCGKQVHAYMFRYGYQKNSFISAALVDMYSNSGRLDNAIQVFRHSTKSESAWNSMIAAYGNHGNGEKAIKLFHEMCESGIKVTKSTFVSLLSACSHSGIVSQGLGYYECMLEKYGIKPEAEHQVYVVDMLGRSGRIDEAYEFTKGLQCNLSSGVWGMLLSVCNYHGEIKLGKKVAEHLFKLEPENVGYYISLSNMYVAAGSWKDATELRQSIYDQGLRKCAGYSLIDVGLG* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3298 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 498 941 - -
Psa2g3298 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 55 280 - -
Psa2g3298 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 243 547 - -
Psa2g3298 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 389 713 - -
Psa2g3298 944 Pfam PPR repeat 667 690 IPR002885 -
Psa2g3298 944 Pfam PPR repeat 565 592 IPR002885 -
Psa2g3298 944 Pfam PPR repeat 153 181 IPR002885 -
Psa2g3298 944 Pfam PPR repeat 462 488 IPR002885 -
Psa2g3298 944 Pfam PPR repeat 256 280 IPR002885 -
Psa2g3298 944 Pfam PPR repeat 434 459 IPR002885 -
Psa2g3298 944 TIGRFAM PPR: pentatricopeptide repeat domain 256 280 IPR002885 -
Psa2g3298 944 TIGRFAM PPR: pentatricopeptide repeat domain 565 591 IPR002885 -
Psa2g3298 944 TIGRFAM PPR: pentatricopeptide repeat domain 764 796 IPR002885 -
Psa2g3298 944 TIGRFAM PPR: pentatricopeptide repeat domain 359 393 IPR002885 -
Psa2g3298 944 TIGRFAM PPR: pentatricopeptide repeat domain 666 689 IPR002885 -
Psa2g3298 944 Pfam PPR repeat family 356 402 IPR002885 -
Psa2g3298 944 Pfam PPR repeat family 763 808 IPR002885 -
Psa2g3298 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Psa2g3298 944 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 55 280 - -
Psa2g3298 944 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 389 713 - -
Psa2g3298 944 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 243 547 - -
Psa2g3298 944 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 498 941 - -
Psa2g3298 944 Pfam E motif 878 939 IPR046848 -
Psa2g3298 944 Gene3D Tetratricopeptide repeat domain 408 517 IPR011990 GO:0005515
Psa2g3298 944 Gene3D Tetratricopeptide repeat domain 211 315 IPR011990 GO:0005515
Psa2g3298 944 Gene3D Tetratricopeptide repeat domain 713 812 IPR011990 GO:0005515
Psa2g3298 944 Gene3D Tetratricopeptide repeat domain 316 407 IPR011990 GO:0005515
Psa2g3298 944 Gene3D Tetratricopeptide repeat domain 813 935 IPR011990 GO:0005515
Psa2g3298 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 761 795 IPR002885 -
Psa2g3298 944 Gene3D Tetratricopeptide repeat domain 55 210 IPR011990 GO:0005515
Psa2g3298 944 Gene3D Tetratricopeptide repeat domain 579 712 IPR011990 GO:0005515
Psa2g3298 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 592 IPR002885 -
Psa2g3298 944 SUPERFAMILY TPR-like 741 920 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3298 Psa-Chr2 374046868 374049702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3298 289 942 Glycoside Hydrolase AT3G49170 28.999 2.23e-92 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3298 - - gmx:100775736 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3298 2 374046868 374049702 Psa2g3298 2 374046868 374049702 ECH