LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g3172	ATGGATCATAATAGAGAAGATGGTTGGAGGGAATTGGTGAAGAACATGCTTCCTCCCGGTGTTTCTGTTCCTGATGATGCTTCTAGTCTTGATTACTCCAGAGGTTCGGAATATTTAGGTCCACCGGTTTCTTATGAAGTACCGATAGTTGAGCCACTAGGTGTGAAATCAAGAACAATAGAACAAATCCCTCTGCCGATGTCTCGTATTGTCGGTGTAACAGGCTCTCCTAATCATAGTCCGAGGGTGTCGGGAAGTTCAGAATCCGTGGTTTCTGTGTTACTAAACCCTGATCTTTCTTCCGGTTCGCCTTCTGCTTCACCTGCTTCGGTTCATAATCCTTCAAATATTGTTTCTAAGACGGCGGTTAACGAAGCGAAGAGGGCGCCTGTTGTTACTTTTAACACTGTCGAAAGGTCTCAAATGAAAGAGGTGGTGGAGGTTGTGAAGCCGGTGTATCCAGAATACGTTGGCGTTGTGAAAGAAACGAAGAAAAAGAAAATTAGAGTTTGTTATAGGTGTGGAAAAGGGAAGTGGGAAACTAAAGAGTCTTGCATAGTTTGCAATGCAAAGTACTGCAGCAACTGTGTGCTAAGGGCAATGGGATCGATGCCTGAGGGGCGAAAATGTGTAACGTGCATCGGCCAGCCTATAGATGAATTGAAGCGTCTGAAATTAGGTAAATATTCGAGGGTGTTGTCCCGGCTGTTGAGTCCTCTTGAAGTCAAGCAAATCATGAAAGCGGAGAAAGAATGTTCTGCGAATCAGCTTCAGCCGGAGCAGTTGAGTATCAACGGGTTGCCTTTAAAGCCTGACGAGATGGCGGAATTACTCGGGTGCCCCTTACCTCCGCGTAAGCTGAAGCCTGGTAGATACTGGTACGACAAAGAATCCGGTCTATGGGGAAAGGAAGGGGAAAAACCTGACAGAATCATTAGTTCAAACTTGAATTTCTCTGGCAAACTAAGCACTAATGCTAGTAATGGAAACACCGAGGTTTACATCAATGGTCGAGAGATTACAAAACTTGAATTGAGGGTACTCAGGTTGGCAAACGTGCAGTGTCCACGGGATACTCATTTTTGGGTTTATGATGATGGTCGTTACGAGGAGGAAGGTCAAAAGAATATAAGAGGAAACATTTGGGAGAAGGCATCGACAAGATTTGTTTGTGCCTTGTTCTCTCTACCATTTCCACATGGACAGCATCATGGTTCAAGAGATGAGACAAGTAATTATACCGCAGTTCCTAAATATCTGGAACAGAAAAAAACTCAGAAGCTTCTTCTTCTTGGAATTCAAGGATCTGGAACTAGCACTATGTTTAAGCAGGCCAAATTCTTGTATGGGAACACATTTACTGAACAAGAGCTAGAGGACGTTAAACTGATGATACAGAGTAACATGTACAAATATCTTAGCATTTTACTTGATGGAAGAGAGCGTTTTGAAGAGGAGGTTGTTTCTAGATTGAATGGACAAGGTTCTCCTCGTCAAATTATGGAACCTGGTAGCAATGGTGAAACTAGCACTACTAGTGAATGCATTTATTCTCTCAACCCAAGGCTAAAACATTTTTCCGACTGGCTCCTGGACATTATAGCCACCGGGGATTTGGATGCGTTTTTCCCTGCAGCGACACGTGAATATGCACCATTAGTTGAAGAAGTGTGGAAAGATCCAGCGATACAAGAAACTTTCAAAAGAAAAGACGAGCTTCACTTCCTTCCAGATGTTGCGGAGTACTTCTTAAGCCGGGCTGTTGAGATATCTAGCAATGAGTATGAACCTTCTGAAAGGGACATACTATATGCAGAAGGGGTTACTCAAGGAAATGGTTTGGCTTTCATGGAATTCTCACTCGATGATCGTAGCCCAAAGTACGAAGCTTATACAGATAACCCGGATGGTCAATTGCAACCTCAGACCAAGTACCAACTCATAAGGGTGAATGCCAAGGGCATGAGTGAAAGTTGCAAGTGGGTTGAAATGTTCGAAGATGTTAGAGCTGTCGTCTTTTGCGTTTCCCTAAGTGACTACGATCAGTTATCTCTTGCACCAGACAGCAGCGGCAACGGAACACTTCTCCAAAACAAGATGATACAAAGCAAGGAGCTTTTCGAAACAATGGTGAGACACCCTTGTTTCAAAGACACCCCTTTAATACTAGTCCTTAACAAATACGACGTCTTCGAGGAAAAAATGAAAAGGGTGTCCCTAAACGCCTGCGAGTGGTTCAACGACTTCTGTCCCGTGCGCGCGCACGACAGTAACCAATCACTCGCCCACCAAGCTTACTTCTACGTCGCCATGAAATTCAAAGACCTCTACGCGTCCATCACAGGAAGAAAACTGTTTGTCGCACAAGTAAGGGCGAGAGACAGAATAACTGTTGATGAAGCATTCAAGTACATAAAAGAGGTTCTGAAATGGGATGAAGAGAAAGATGAAAATTACTATGGTCCACCTGAGGATTCAATTACAGACATGAGTTCTTCTTTTTATGTTAGACAGGAGTAA	2520	0.4361	MDHNREDGWRELVKNMLPPGVSVPDDASSLDYSRGSEYLGPPVSYEVPIVEPLGVKSRTIEQIPLPMSRIVGVTGSPNHSPRVSGSSESVVSVLLNPDLSSGSPSASPASVHNPSNIVSKTAVNEAKRAPVVTFNTVERSQMKEVVEVVKPVYPEYVGVVKETKKKKIRVCYRCGKGKWETKESCIVCNAKYCSNCVLRAMGSMPEGRKCVTCIGQPIDELKRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLQPEQLSINGLPLKPDEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFSGKLSTNASNGNTEVYINGREITKLELRVLRLANVQCPRDTHFWVYDDGRYEEEGQKNIRGNIWEKASTRFVCALFSLPFPHGQHHGSRDETSNYTAVPKYLEQKKTQKLLLLGIQGSGTSTMFKQAKFLYGNTFTEQELEDVKLMIQSNMYKYLSILLDGRERFEEEVVSRLNGQGSPRQIMEPGSNGETSTTSECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPDVAEYFLSRAVEISSNEYEPSERDILYAEGVTQGNGLAFMEFSLDDRSPKYEAYTDNPDGQLQPQTKYQLIRVNAKGMSESCKWVEMFEDVRAVVFCVSLSDYDQLSLAPDSSGNGTLLQNKMIQSKELFETMVRHPCFKDTPLILVLNKYDVFEEKMKRVSLNACEWFNDFCPVRAHDSNQSLAHQAYFYVAMKFKDLYASITGRKLFVAQVRARDRITVDEAFKYIKEVLKWDEEKDENYYGPPEDSITDMSSSFYVRQE*	840

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g3172	839	Gene3D	-	454	606	IPR011025	GO:0007165
	Psa2g3172	839	MobiDBLite	consensus disorder prediction	825	839	-	-
	Psa2g3172	839	SUPERFAMILY	FYVE/PHD zinc finger	151	214	IPR011011	-
	Psa2g3172	839	Gene3D	-	623	818	IPR027417	-
	Psa2g3172	839	SMART	galpha_1	414	806	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3	19	835	-	-
	Psa2g3172	839	MobiDBLite	consensus disorder prediction	820	839	-	-
	Psa2g3172	839	Pfam	G-protein alpha subunit	421	808	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	CDD	G-alpha	426	812	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	PRINTS	Alpha G protein (transducin) signature	427	442	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	PRINTS	Alpha G protein (transducin) signature	595	617	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	PRINTS	Alpha G protein (transducin) signature	668	696	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	PRINTS	Alpha G protein (transducin) signature	721	730	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	19	835	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Psa2g3172	839	SUPERFAMILY	Transducin (alpha subunit), insertion domain	453	605	IPR011025	GO:0007165
	Psa2g3172	839	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	423	811	IPR027417	-
	Psa2g3172	839	ProSiteProfiles	G-alpha domain profile.	424	820	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g3172	Psa-Chr2	363954669	363959595	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g3172	-		-	gmx:100794534	1437.94

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa2g3172	2	363954669	363959595	Psa2g3172	2	363954669	363959595	ECH