Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3119 ATGGCGGTGAAATGCTTATTCCGCACCAGAGTTCACTTCCAACAACCACGTTTCTTCAGGTTCTATTCTCCCAATTCTTCCGCGTTGTTGTTGGAAGATGAAACTCCAAATTTCAATGCTCCAGTTCCTAAAACCCCGATGAAATTATCTCGTTTGGTTGTTAAGGTGTTCAAGTCCTTAAATTGGGGGGTTGCAAGGGAAGTAAGGTTCAAAGGTTTGGTTCAAACTCATGGTTTTTATCACTCAATCAATTCCTTTAGAATGATCATTCACACCTATTCTTTGGCTGGTATGAGTTTGGAAGTCTTTATTTTGCTTAGAGATATTGTTGGGTACTATAAAGAGGAAAACCTAGACGCATTCGAGTTGTTTTCGGTTTTGCTTGATTCGCCACACCATGTGAAAAGGTCTGGTTTTGTGTTTGATATGCTTATGAAAGTTTTTGCTTCAAACTCTATGCTTGAACATGCCTATTATGTGTTTGTTAGTGCTAGGGATGTTGGGATTCAGCCGAATATAATGTCTTGTAATTTCTTGTTGAAATGTTTGGTAGAAGCAAATAGAGTGGATGGTGTGAGATGTTTCTTTGAGGATTTGAAAAACTTTGGTCCAAAGATGAATATCCACACTTATACAATCATGATGAACTTTTATTGTAGAGATGTTGGGTGCAGTGCTGATATTAGGCGAGCTTCTGAGATTCTAGGAAAGATATATAGGAGTGGGGAAACCCCGACTGTTGTTACGTATAGTACTTATATTAAGGGACTTTGTAAAGTTGGTTCTATTGAGGCTGCGTTGAAGTTAATTTGTGACTTGCACCGAAAAAACCAGCCTCTCAATAGTCATTGTTTTAATGCTGTCATATATGGATTTTGTCAAAGAGGTGCAGTAGATGAAGCTTCAATAGTTTTGGAAGAAATGAAAAACTGTGTAATACTTCCCGATGTTTATAGTTATAGCATTTTAGTTGATGCGTTTTGCAAGAATGGAGATGATAAGAGAGCTATTGACTTGATGACAGATATGAAGCTCTATGGAATAAAACCATCCATTGTTAGCTATACTTCTCTCATTCGCGGTCTATGCAAGAATAGGCCGATGCAAAGCTTGATGAATATTTTCCATGAAATCGGAGCTTCAGGTTGCAAATATGATCAGATTATGTATGAAACTTTAGTTGATGGATTTTGCAGGAAAGGTGACATGCATTCAGCTATCAATGTTATGGAGGAGATGAGTGGCAATAATTTTGCTCCCTCTGCTTTTAGTTATTGCAGTCTAATTAGAGGGTTCTACAAATTGAGACAATTCAGTAACGCATTGAAAATTTATGGTATCATGCAAAAAAGGGGTTTCTGGCCAGATACAATCACTTGCAATCATATTCTTAGTATTTACTGCAGGGAACGTGAATTCAATGAAGCTTTGGCGTTGTCGGAGAAATTCCAAGAACACGGAGTCAACCTCAACCCATATTCATATAATGAATTCATCCACATGCTTTGTAGAGAACATTTTCCAGAAAAGGCACTGCAGCTTCTGCCACTAATGCTTAAAAAGAATGTACTTCCTGGAGTTGTTAATTATAGCACACTTATAACTGGCTTTGTCAAACATTCAAATTCTAAAAAGGCCGTGATGTTATTCACAAGAATGACAAAAGTAGGAATCACTTTCAACGTCAAAACATATACATTTCTTATGGACCAATGTATCCGTAATTGCAAAAGGCGTTTAGCATACTACTTATTTGAGGAAATGAAAGAAAGGGGTGTATATCCAGATCAGAAAGCATATAATACTCTAATAATTGCCTTTTGTAATGCTGAAGAGATGATTATGGCACAGGCATTATATTATGAAATGTTGCGGGAGGGCTGTTCACCAGATGTAATTACTTATACTAGTTTGAGTAATGCATATTGGAAGTTAAACATGATAGACCAGGCTCATAAGTTGTATGATGAAATGAGGGCAACTCTTTTGTCCTGA 1995 0.3709 MAVKCLFRTRVHFQQPRFFRFYSPNSSALLLEDETPNFNAPVPKTPMKLSRLVVKVFKSLNWGVAREVRFKGLVQTHGFYHSINSFRMIIHTYSLAGMSLEVFILLRDIVGYYKEENLDAFELFSVLLDSPHHVKRSGFVFDMLMKVFASNSMLEHAYYVFVSARDVGIQPNIMSCNFLLKCLVEANRVDGVRCFFEDLKNFGPKMNIHTYTIMMNFYCRDVGCSADIRRASEILGKIYRSGETPTVVTYSTYIKGLCKVGSIEAALKLICDLHRKNQPLNSHCFNAVIYGFCQRGAVDEASIVLEEMKNCVILPDVYSYSILVDAFCKNGDDKRAIDLMTDMKLYGIKPSIVSYTSLIRGLCKNRPMQSLMNIFHEIGASGCKYDQIMYETLVDGFCRKGDMHSAINVMEEMSGNNFAPSAFSYCSLIRGFYKLRQFSNALKIYGIMQKRGFWPDTITCNHILSIYCREREFNEALALSEKFQEHGVNLNPYSYNEFIHMLCREHFPEKALQLLPLMLKKNVLPGVVNYSTLITGFVKHSNSKKAVMLFTRMTKVGITFNVKTYTFLMDQCIRNCKRRLAYYLFEEMKERGVYPDQKAYNTLIIAFCNAEEMIMAQALYYEMLREGCSPDVITYTSLSNAYWKLNMIDQAHKLYDEMRATLLS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 564 596 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 389 421 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 493 526 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 458 491 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 530 561 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 248 277 IPR002885 -
Psa2g3119 664 TIGRFAM PPR: pentatricopeptide repeat domain 599 632 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Psa2g3119 664 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 661 - -
Psa2g3119 664 Gene3D Tetratricopeptide repeat domain 345 413 IPR011990 GO:0005515
Psa2g3119 664 Gene3D Tetratricopeptide repeat domain 483 556 IPR011990 GO:0005515
Psa2g3119 664 Gene3D Tetratricopeptide repeat domain 414 482 IPR011990 GO:0005515
Psa2g3119 664 Pfam PPR repeat 382 414 IPR002885 -
Psa2g3119 664 Pfam PPR repeat 627 659 IPR002885 -
Psa2g3119 664 Pfam PPR repeat 243 269 IPR002885 -
Psa2g3119 664 Gene3D Tetratricopeptide repeat domain 571 664 IPR011990 GO:0005515
Psa2g3119 664 Gene3D Tetratricopeptide repeat domain 114 223 IPR011990 GO:0005515
Psa2g3119 664 Gene3D Tetratricopeptide repeat domain 224 344 IPR011990 GO:0005515
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 664 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Psa2g3119 664 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 3 661 - -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Psa2g3119 664 Pfam PPR repeat 423 453 IPR002885 -
Psa2g3119 664 Pfam PPR repeat 529 558 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Psa2g3119 664 Pfam PPR repeat family 281 329 IPR002885 -
Psa2g3119 664 Pfam PPR repeat family 561 609 IPR002885 -
Psa2g3119 664 Pfam PPR repeat family 171 220 IPR002885 -
Psa2g3119 664 Pfam PPR repeat family 455 504 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Psa2g3119 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3119 Psa-Chr2 357658359 357666361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3119 316 664 Glycosyltransferase AT1G05670 23.429 1.85e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3119 - - mtr:MTR_5g029690 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3119 2 357658359 357666361 Psa2g3119 2 357658359 357666361 ECH